View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_4 (Length: 530)
Name: NF20559_high_4
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 9072450 - 9071948
Alignment:
| Q |
14 |
attattcttttagaaagttaatgataaatatttaaccttaacaaatgaccatgtttatatttcttcaagaaaaaatgaccatgtatattttaaatcttag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072450 |
attattcttttagaaagttaatgataaatatttaaccttaacaaatgaccatgtttatatttcttcaagaaaaaatgaccatgtatattttaaatcttag |
9072351 |
T |
|
| Q |
114 |
ccccccaattaaattacacacgagaacaaactcttgcgtccttgtaaattttgcccggtctacaaaagtaccctttacttggattgcaatggctatcttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072350 |
ccccccaattaaattacacacgagaacaaactcttgcgtccttgtaaattttgcccggtctacaaaagtaccctttacttggattgcaatggctatcttg |
9072251 |
T |
|
| Q |
214 |
tgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatgtactagagaaaagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9072250 |
tgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactagagaaaagt |
9072151 |
T |
|
| Q |
314 |
ccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttcaaatgccacatttctattcttaccccaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072150 |
ccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattcttaccccaat |
9072051 |
T |
|
| Q |
414 |
gaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072050 |
gaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgt |
9071951 |
T |
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| Q |
514 |
gat |
516 |
Q |
| |
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||| |
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| T |
9071950 |
gat |
9071948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 326 - 515
Target Start/End: Complemental strand, 9059423 - 9059233
Alignment:
| Q |
326 |
tatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttc-aaatgccacatttctattcttaccccaatgaggtaaccct |
424 |
Q |
| |
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|||||||| |||||||||||||||| | | | || ||| |||||||||||||||||||| |||||||| ||| |||||||| ||||||||||| |||||| |
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| T |
9059423 |
tatttctcattaaccttcaaaaattgccccacatttttatacttcttgaaaactccttcgaaatgccaaattcctattcttcccccaatgaggcaaccct |
9059324 |
T |
|
| Q |
425 |
ccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgtga |
515 |
Q |
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| T |
9059323 |
ccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctttgctacggtaatacgtga |
9059233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 9059541 - 9059422
Alignment:
| Q |
185 |
cctttacttggattgcaatggctatcttgtgaacaaatacacaaaccttct---aatgcacacccatttttcaatattgtcacaccttcttttattccaa |
281 |
Q |
| |
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|||||||||||||||||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
9059541 |
cctttacttggattgcaatgactatcttgagagcaaatacacaaaccttcttctaatgcacacccatttttcaatattgtcacac---cttttaatccaa |
9059445 |
T |
|
| Q |
282 |
gcacttgatctgtccatgtacta |
304 |
Q |
| |
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||| |||||| ||||| |||||| |
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| T |
9059444 |
gcatttgatccgtccaagtacta |
9059422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 207 - 517
Target Start/End: Complemental strand, 49016554 - 49016244
Alignment:
| Q |
207 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatgtactaga |
306 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| | |||||| |||||| |
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| T |
49016554 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
49016455 |
T |
|
| Q |
307 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttcaaatgccacatttctattctta |
406 |
Q |
| |
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|||||| ||| |||||||||| | ||||||||||||||||| || | | || ||||| || |||| ||||| | | |||||||| || |
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| T |
49016454 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgctcccacaaatcctaagtttctatttttc |
49016355 |
T |
|
| Q |
407 |
ccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgat |
506 |
Q |
| |
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|||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||||||| ||||| | |
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| T |
49016354 |
ccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggt |
49016255 |
T |
|
| Q |
507 |
aatatgtgatg |
517 |
Q |
| |
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||||||||||| |
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| T |
49016254 |
aatatgtgatg |
49016244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 200 - 517
Target Start/End: Original strand, 490193 - 490510
Alignment:
| Q |
200 |
caatggctatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatg |
299 |
Q |
| |
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||||| ||||||| ||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| |||||||| |
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| T |
490193 |
caatgactatcttttgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaat |
490292 |
T |
|
| Q |
300 |
tactagagaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttcaaatgccacatttct |
399 |
Q |
| |
|
|||||||||||||| | | |||||||||| ||||||||||||||| | | | || || || || | | || ||||| | | |||||| |
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| T |
490293 |
cactagagaaaagtctcttcgggtcatatttctttttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttct |
490392 |
T |
|
| Q |
400 |
attcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttg |
499 |
Q |
| |
|
||| || |||||||| |||||||||||||| ||||| | ||| |||||||| |||||||||| || ||||||||||||||||||| || ||||||||| |
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| T |
490393 |
attttttccccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatcttta |
490492 |
T |
|
| Q |
500 |
ctacgataatatgtgatg |
517 |
Q |
| |
|
|| || |||||| ||||| |
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|
| T |
490493 |
ctgcggtaatatatgatg |
490510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 10811580 - 10811651
Alignment:
| Q |
441 |
caatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatg |
512 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
10811580 |
caatttgttcaatctcttcaaaaatgtcttcataaagtctaggagccattagatctttgctacgataatatg |
10811651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 365 - 512
Target Start/End: Complemental strand, 10813180 - 10813034
Alignment:
| Q |
365 |
tacttcttgaaaactccttcaaatgccacatttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaa |
464 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||| ||||||||||| || | ||||||||| || | | | ||||||||||||||||||| | || |
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| T |
10813180 |
tacttcttgaaaactccttcaaatgcaaggttcctatgattaccccaatgtggcagccctccatattttata-tcccaatttgttcaatctctttcaaaa |
10813082 |
T |
|
| Q |
465 |
tgtcttcataaagcctaggagccattggatctttgctacgataatatg |
512 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||| ||||||| |
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|
| T |
10813081 |
tgtcttcataaagtctaggagccattagatctttgccacggtaatatg |
10813034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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