View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_7 (Length: 492)
Name: NF20559_high_7
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 38779874 - 38779383
Alignment:
| Q |
1 |
atcggtttccaaggtaatatgtatgtatagtgaaatttgttaaatagatactggataaaagatagaatattttgtgatagagtgagcattcagaacactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779874 |
atcggtttccaaggtaatatgtatgtatagtgaaatttgttaaatagatactggataaaagatagaatattttgtgatagagtgagcattcagaacactg |
38779775 |
T |
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| Q |
101 |
aactttattattttttatacagcgtgtagccgtgtacggtaagacagcttaaagcctgacaccattcatcaaataatgtcaaaatgagagatatgtgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779774 |
aactttattattttttatacagcgtgtagccgtgtacggtaagacagcttaaagcctgacaccattcatcaaataatgtcaaaatgagagatatgtgaag |
38779675 |
T |
|
| Q |
201 |
ttctatgttttgtctttagcatgaaacggaagaagaggaagatgaaccccaaacatcaacggcagtcatcacactccaattttgcagactagtgctagtg |
300 |
Q |
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| T |
38779674 |
ttctaagttttgtctttggcatgaaacggaagaagaggaagatgaaccccgaacatcaacggcagtcatcacactccaattttgcagactagtgctagtg |
38779575 |
T |
|
| Q |
301 |
acaattaagctagatccttccacatttaagaaacagtcaaatagatatcatcttaaaatatttgaaagaagggtttctgcattttgacttaacttaaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779574 |
acaattaagctagatccttccacatttaagaaacagtcaaatggatatcatcttaaaatatttgaaagaagggtttctgcattttgacttaacttaaaga |
38779475 |
T |
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| Q |
401 |
tactctacccatgtaggatttgaaatctctcaatatggtactaactccaactatatttctactattatacaaataggtggtaagagtttgta |
492 |
Q |
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| T |
38779474 |
tactctacccatgtaggatttgaaatctctcaatatggtactaactccaactatatttctactattatacaaataggtggtaagagtttgta |
38779383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 52933979 - 52934093
Alignment:
| Q |
253 |
acatcaacggcagtcatca-cactccaattttgcagactagtgctagtgacaattaagctagatccttccacatttaagaaacagtcaaatagatatcat |
351 |
Q |
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||||||||| |||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||| |||||||| |
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| T |
52933979 |
acatcaacgtcagtaatcaacactccaatcttgcagactagtgctagtgacagttaagctagatccttctacatttaaaaaacaatcaaatggatatcat |
52934078 |
T |
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| Q |
352 |
cttaaaatatttgaa |
366 |
Q |
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| T |
52934079 |
cttaaaatatttgaa |
52934093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 52941614 - 52941728
Alignment:
| Q |
253 |
acatcaacggcagtcatca-cactccaattttgcagactagtgctagtgacaattaagctagatccttccacatttaagaaacagtcaaatagatatcat |
351 |
Q |
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||||||||| |||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||| |||||||| |
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| T |
52941614 |
acatcaacgtcagtaatcaacactccaatcttgcagactagtgctagtgacagttaagctagatccttctacatttaaaaaacaatcaaatggatatcat |
52941713 |
T |
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| Q |
352 |
cttaaaatatttgaa |
366 |
Q |
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||||||||||||||| |
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| T |
52941714 |
cttaaaatatttgaa |
52941728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 376 - 492
Target Start/End: Original strand, 52934269 - 52934385
Alignment:
| Q |
376 |
tctgcattttgacttaacttaaagatactctacccatgtaggatttgaaatctctcaatatggtactaactccaactatatttctactattatacaaata |
475 |
Q |
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||||||||| ||| |||||||| |||||||||| ||| ||| || ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
52934269 |
tctgcatttagacctaacttaaggatactctactcatatagaatctgaaatctcccaatatgatactaattccaactatatttctactagaatacaaata |
52934368 |
T |
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| Q |
476 |
ggtggtaagagtttgta |
492 |
Q |
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| T |
52934369 |
gttggtaagagtttgta |
52934385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 376 - 492
Target Start/End: Original strand, 52941904 - 52942020
Alignment:
| Q |
376 |
tctgcattttgacttaacttaaagatactctacccatgtaggatttgaaatctctcaatatggtactaactccaactatatttctactattatacaaata |
475 |
Q |
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||||||||| ||| |||||||| |||||||||| ||| ||| || ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
52941904 |
tctgcatttagacctaacttaaggatactctactcatatagaatctgaaatctcccaatatgatactaattccaactatatttctactagaatacaaata |
52942003 |
T |
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| Q |
476 |
ggtggtaagagtttgta |
492 |
Q |
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| T |
52942004 |
gttggtaagagtttgta |
52942020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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