View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_high_8 (Length: 482)
Name: NF20559_high_8
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 22 - 465
Target Start/End: Original strand, 38747743 - 38748183
Alignment:
| Q |
22 |
tgaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaatcgaagaaccatagcgt |
121 |
Q |
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| T |
38747743 |
tgaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaattgaagaaccgtagcgt |
38747842 |
T |
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| Q |
122 |
gaaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggag |
221 |
Q |
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| T |
38747843 |
gaaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggag |
38747942 |
T |
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| Q |
222 |
aattattagcaccattacca------ttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagctt |
315 |
Q |
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| T |
38747943 |
aattattagcaccattaccattaccgttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagctt |
38748042 |
T |
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| Q |
316 |
gttatttttcttgttgcatgaaaaatgttcatttgaagatggagaagatgatgtaattggaaggattcttaattgacgaggagtgtgtgcaaagaaacaa |
415 |
Q |
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| T |
38748043 |
gttatttttcttgttgcatgaaaaatgttcattt---------gaagatgatgtaactggaaggattcttaattgacgaggagtgtgtgcaaagaaacaa |
38748133 |
T |
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| Q |
416 |
acttttctcttacagtttttaccatctttgcatgcttcagttctgtatct |
465 |
Q |
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| T |
38748134 |
acttttctcttacagtttttaccatctttgcatgcttcagttctgtatct |
38748183 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 459
Target Start/End: Complemental strand, 30385830 - 30385759
Alignment:
| Q |
388 |
ttgacgaggagtgtgtgcaaagaaacaaacttttctcttacagtttttaccatctttgcatgcttcagttct |
459 |
Q |
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| T |
30385830 |
ttgacgaggtgtatgagcaaaaaaacaaatttttcgcttacaatttttaccatctttacaagcttcagttct |
30385759 |
T |
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