View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20559_low_10 (Length: 412)

Name: NF20559_low_10
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20559_low_10
NF20559_low_10
[»] chr3 (7 HSPs)
chr3 (116-271)||(2944767-2944922)
chr3 (24-105)||(46523954-46524036)
chr3 (337-405)||(2944988-2945057)
chr3 (19-75)||(2943833-2943889)
chr3 (340-405)||(2945192-2945258)
chr3 (22-78)||(49883571-49883627)
chr3 (337-395)||(29626713-29626772)
[»] chr6 (3 HSPs)
chr6 (22-101)||(6670417-6670496)
chr6 (46-105)||(6681213-6681273)
chr6 (204-266)||(6670360-6670421)
[»] chr1 (1 HSPs)
chr1 (22-105)||(18137092-18137176)
[»] chr5 (4 HSPs)
chr5 (195-266)||(36856798-36856868)
chr5 (46-105)||(6160855-6160915)
chr5 (22-105)||(36846375-36846459)
chr5 (22-57)||(36856757-36856792)
[»] chr4 (1 HSPs)
chr4 (338-396)||(52866491-52866550)
[»] scaffold0299 (1 HSPs)
scaffold0299 (56-105)||(16721-16771)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 116 - 271
Target Start/End: Original strand, 2944767 - 2944922
Alignment:
Q  116 taaaatttacataagtgaaatttgaacaacaatccgtaacagacagttaatgaaaactataaagctcgagagataactaagttcttaccagcactggttt 215  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944767 taaaatttatagaagtgaaatttgaacaacaatccgtaacagacagttaatgaaaactataaagctcgagagataactaagttcttaccagcactggttt 2944866  T
Q  216 ctgatttaactcgtcttgattcaaccttgttttgatggcaatcagcatctcaccgg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944867 ctgatttaactcgtcttgattcaaccttgttttgatggcaatcagcatctcaccgg 2944922  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 46524036 - 46523954
Alignment:
Q  24 ggttcagccttagttgcgcggaattgagatgcatgcttcaaaacgttcagcag-ttcaccatctgtgtgtaagtcagcaagta 105  Q
    |||||||| |||  ||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  46524036 ggttcagcattatctgcacggcattgagatgcatgctttaaaacgttcagcagtttcaccatctgtgtgtaagtcggcaagta 46523954  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 2944988 - 2945057
Alignment:
Q  337 cacaaactcaattcaaattacaaaattacacgtcac-cgaatacaaattatataagaactgtttcatctc 405  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||| ||||||    
T  2944988 cacaaactcaattcaaattacaaaattacacgtgactggaatacacattatataagaactgttccatctc 2945057  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 2943833 - 2943889
Alignment:
Q  19 agtatggttcagccttagttgcgcggaattgagatgcatgcttcaaaacgttcagca 75  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||    
T  2943833 agtatggttcagccttagttgcgcggcattgagatgcattcttcaaaacggtcagca 2943889  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 2945258 - 2945192
Alignment:
Q  340 aaactcaattcaaattacaaaattacacgtcac-cgaatacaaattatataagaactgtttcatctc 405  Q
    |||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||    
T  2945258 aaactcaattcatattacaaaattacacgtcactggaatacacattatataagaactgttccatctc 2945192  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 49883627 - 49883571
Alignment:
Q  22 atggttcagccttagttgcgcggaattgagatgcatgcttcaaaacgttcagcagtt 78  Q
    |||||||||| |||||||||||  |||||||||||||||||||||| | ||||||||    
T  49883627 atggttcagcattagttgcgcgacattgagatgcatgcttcaaaacatccagcagtt 49883571  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 29626713 - 29626772
Alignment:
Q  337 cacaaactcaattcaaattacaaaattacacgtcacc-gaatacaaattatataagaact 395  Q
    ||||| |||||| | |||||||||||||||||||||| ||||||| ||||||||||||||    
T  29626713 cacaatctcaatcctaattacaaaattacacgtcaccggaatacacattatataagaact 29626772  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 6670496 - 6670417
Alignment:
Q  22 atggttcagccttagttgcgcggaattgagatgcatgcttcaaaacgttcagcagttcaccatctgtgtgtaagtcagca 101  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  6670496 atggttcagccttagttgcgcggcattgagacgcatgcttcaaaacgttcagcagttcaccatctgtgtgcaagtcagca 6670417  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 6681273 - 6681213
Alignment:
Q  46 attgagatgcatgcttcaaaacgttcagcag-ttcaccatctgtgtgtaagtcagcaagta 105  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||    
T  6681273 attgagatgcatgcttcaaaacgttcatcagtttcaccatctgtgtgtaattcagtaagta 6681213  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 6670421 - 6670360
Alignment:
Q  204 cagcactggtttctgatttaactcgtcttgattcaaccttgttttgatggcaatcagcatctc 266  Q
    |||||| ||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6670421 cagcaccggtttcttatttaactcatcttgattcaa-cttgtgttgatggcaatcagcatctc 6670360  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 18137176 - 18137092
Alignment:
Q  22 atggttcagccttagttgcgcggaattgagatgcatgcttcaaaacgttcagcag-ttcaccatctgtgtgtaagtcagcaagta 105  Q
    |||||||||  |||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18137176 atggttcagaattagctgtgcggcattgagatgcatgcttcaaaacgttcagcagtttcaccatctgtgtgtaagtcagtaagta 18137092  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 36856798 - 36856868
Alignment:
Q  195 agttcttaccagcactggtttctgatttaactcgtcttgattcaaccttgttttgatggcaatcagcatctc 266  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  36856798 agttcttaccagcaccggtttctgatttaactcgtcttgattcaa-cttgtgttgatggaaatcagcatctc 36856868  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 6160855 - 6160915
Alignment:
Q  46 attgagatgcatgcttcaaaacgttcagcag-ttcaccatctgtgtgtaagtcagcaagta 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  6160855 attgagatgcatgcttcaaaacgttcagcagtttcaccatctgtgtgtaggtcagtaagta 6160915  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 36846375 - 36846459
Alignment:
Q  22 atggttcagccttagttgcgcggaattgagatgcatgcttcaaaacgttcagcag-ttcaccatctgtgtgtaagtcagcaagta 105  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||| |||||    
T  36846375 atggttcagacttagttgcccggcattgagatgcatgcttcaaaatgttcaacagtttcaccttctgtgtataagtcagtaagta 36846459  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 36856757 - 36856792
Alignment:
Q  22 atggttcagccttagttgcgcggaattgagatgcat 57  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36856757 atggttcagccttagttgcgcggcattgagatgcat 36856792  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 52866491 - 52866550
Alignment:
Q  338 acaaactcaattcaaattacaaaattacacgtcacc-gaatacaaattatataagaactg 396  Q
    |||| |||||| | |||||||||||||||||||||| ||||| | |||||||||||||||    
T  52866491 acaatctcaatcctaattacaaaattacacgtcacctgaatatacattatataagaactg 52866550  T

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Target: scaffold0299 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 16771 - 16721
Alignment:
Q  56 atgcttcaaaacgttcagcagtt-caccatctgtgtgtaagtcagcaagta 105  Q
    |||||||||||||||||  |||| ||||||||||||||||||||| |||||    
T  16771 atgcttcaaaacgttcattagtttcaccatctgtgtgtaagtcagtaagta 16721  T

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