View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_14 (Length: 367)
Name: NF20559_low_14
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 350
Target Start/End: Complemental strand, 3225407 - 3225085
Alignment:
| Q |
30 |
aaaaatgtttttcaatattggagaatcatttggcacatcaatgttcaatctacgagctctatcaggaagtgaagggaaaataacttcaaaaccaactagc |
129 |
Q |
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| T |
3225407 |
aaaaatgttttttaatattggagaatcatttggcacatcaatgttcaatctacgagctctatcaagaagtgaagggaatataacttcaaaaccagctagc |
3225308 |
T |
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| Q |
130 |
tccacattctcatcctcaagcttgtcaagattctctctgaaaaatgacattgctatata--cacatacacatgacgatatcagccacatttgacctcaat |
227 |
Q |
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| T |
3225307 |
tcctcattctcatcctcaagcttgtcaagattctctctgaaaaatgacattgctatatatacacatacacatgacgatatcagccatatttgacctcaat |
3225208 |
T |
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| Q |
228 |
tctccacaatataaatgtgataacaatttaaaatcttgataacaagacaaatatgttaatgtatattacctttgtcacacttttcagggtgcatattcca |
327 |
Q |
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| T |
3225207 |
tctccacaatataaatatgataacaatttaaaatcttgataacaagactaatatgttaatgtatattacctttgtcacacttttcagggtgcatattcca |
3225108 |
T |
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| Q |
328 |
tgttgttaatgcaataacacaag |
350 |
Q |
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| T |
3225107 |
tgttgttaatgcaataacacaag |
3225085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 3184162 - 3184251
Alignment:
| Q |
30 |
aaaaatgtttttcaatattggagaatcatttggcacatcaatgttcaatctacgagctctatcaggaagtgaagggaaaataacttcaaa |
119 |
Q |
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| T |
3184162 |
aaaaatgtttttcaatattggagaatcatttggcacatcaatgttcaatcttcgagctctatcgagaagtgaaggaaaagcaacttcaaa |
3184251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 3184571 - 3184632
Alignment:
| Q |
289 |
tatattacctttgtcacacttttcagggtgcatattccatgttgttaatgcaataacacaag |
350 |
Q |
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| T |
3184571 |
tatattacctttctcgcacttttcggggtgcatattccacgatcttaaagcaataacacaag |
3184632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3184176 - 3184144
Alignment:
| Q |
1 |
ttgaaaaacatttttgcaaagagagatgaaaaa |
33 |
Q |
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| T |
3184176 |
ttgaaaaacatttttgcaaagagagatgaaaaa |
3184144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 3225396 - 3225425
Alignment:
| Q |
4 |
aaaaacatttttgcaaagagagatgaaaaa |
33 |
Q |
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| T |
3225396 |
aaaaacatttttgcaaagagagatgaaaaa |
3225425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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