View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20559_low_15 (Length: 364)

Name: NF20559_low_15
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20559_low_15
NF20559_low_15
[»] chr2 (8 HSPs)
chr2 (1-354)||(1456434-1456787)
chr2 (14-337)||(1430186-1430497)
chr2 (14-329)||(1441913-1442216)
chr2 (14-344)||(1449305-1449623)
chr2 (50-320)||(1436364-1436619)
chr2 (33-120)||(1449710-1449797)
chr2 (247-296)||(21017416-21017465)
chr2 (1-33)||(1456779-1456811)
[»] chr1 (1 HSPs)
chr1 (109-227)||(43826024-43826142)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 1456787 - 1456434
Alignment:
Q  1 gaatctacttgggtatgtgaagttgaatctactatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1456787 gaatctacttgggtatgtgaagttgaatctactatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttct 1456688  T
Q  101 gccattgctcccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1456687 gccattgctcccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaa 1456588  T
Q  201 agccacttggattaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1456587 agccacttggattaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtct 1456488  T
Q  301 atgagaagtcctttaacctggattcaaaacaatgtcaaacagtttccacctatg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1456487 atgagaagtcctttaacctggattcaaaacaatgtcaaacagtttccgcctatg 1456434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 1430497 - 1430186
Alignment:
Q  14 tatgtgaagttgaatctacta---tccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctc 110  Q
    |||||||||||||||||||||   |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  1430497 tatgtgaagttgaatctactactatccaatttgcattatggtgatgcatgtggttgttgttaaaatcttgtcggtacgtctcttctttctgccattgctc 1430398  T
Q  111 ccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttgg 210  Q
    ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |||||||||||||| ||   |||||||||||||||||| ||||||    
T  1430397 ccatttttcggccaaaccatcaccttctagcattctaaccacctcagacatcttaggtctttccataggggacccttgtgtgcatagtaaagcaacttgg 1430298  T
Q  211 attaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtc 310  Q
    ||||||| ||||||||| |               | || |||| |||||||||||  | |||||| || ||||||||||||||||||||| |||||||||    
T  1430297 attaactgctctacctcat---------------catcctcataatttccctttagctctgcatcaacaagtgtttccaacttcttgtctttgagaagtc 1430213  T
Q  311 ctttaacctggattcaaaacaatgtca 337  Q
    |||||||||| ||||||||||||||||    
T  1430212 ctttaacctgcattcaaaacaatgtca 1430186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 1442216 - 1441913
Alignment:
Q  14 tatgtgaagttgaatctacta---tccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctc 110  Q
    |||||||||||||||||||||   |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||    
T  1442216 tatgtgaagttgaatctactactatccaatttgcattagggtgatgcatgtggttgttgttaaaatcttgtcggtacgtctcttctttttgccattgctc 1442117  T
Q  111 ccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttgg 210  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||||||||| || || ||||||||||| ||   ||||||||||| |||||| |||||     
T  1442116 ccatttttctgccaaaccatcgccttctagcattctaaccacctcagacatcttaggcctttccataggggacccttgtgtgcatattaaagcaacttga 1442017  T
Q  211 attaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtc 310  Q
    |||| ||| ||||               ||||| | ||||| | |||||||||||| |  ||||| ||||||||||||||||| |||||||||||| |||    
T  1442016 attagcttttcta---------------tctcttcatcatcgtaatttccctttaactccgcatctaccagtgtttccaactttttgtctatgagatgtc 1441932  T
Q  311 ctttaacctggattcaaaa 329  Q
    |||||||||||||||||||    
T  1441931 ctttaacctggattcaaaa 1441913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 1449623 - 1449305
Alignment:
Q  14 tatgtgaagttgaat---ctactatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctc 110  Q
    ||||||||||||| |   ||||||||||||||| ||||| ||||||||||||||| |||||||||||  |||||| ||||||||||||||||||||||||    
T  1449623 tatgtgaagttgagtctactactatccaatttgtattaaagtgatgcatgtggttgttgttaaaatcccgtcggttcgtctcctctttctgccattgctc 1449524  T
Q  111 ccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttgg 210  Q
    ||||||||| | ||||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| ||   |||||||||||||||||| ||||||    
T  1449523 ccatttttcggacaaaccatcaccttctagcattctaacaacctcagacatcttaggcctttccataggggacccttgtgtgcatagtaaagcaacttgg 1449424  T
Q  211 attaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtc 310  Q
    |||| ||| ||||               ||||| | | ||||| |||||||||||  | |||||| || ||||||||||| |||||||||  ||||||||    
T  1449423 attagcttttcta---------------tctcttcatgatcataatttccctttagctctgcatcaacaagtgtttccaatttcttgtcttggagaagtc 1449339  T
Q  311 ctttaacctggattcaaaacaatgtcaaacagtt 344  Q
    |||||||||| |||||||  ||||||| ||||||    
T  1449338 ctttaacctgaattcaaagtaatgtcagacagtt 1449305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 50 - 320
Target Start/End: Complemental strand, 1436619 - 1436364
Alignment:
Q  50 ggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctcccatttttcagccaaaccatcgccttcaagcattctcac 149  Q
    ||||||||||| |||| ||| |||||||||||| |||| |||| |||||||||||||||  ||||||||| ||||||||||||||||| |||||||||||    
T  1436619 ggtgatgcatgcggttgttgctaaaatcttgtcagtacttctcttctttctgccattgcatccatttttcggccaaaccatcgccttctagcattctcac 1436520  T
Q  150 cacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttggattaacttctctacctcttggattaacttctctacctca 249  Q
    |||||||||||| || |||||||||||||| ||   |||||||||||||||||| ||||||||||||| ||||||||| |               | |||    
T  1436519 cacctcagacatcttaggtctttccataggggacccttgtgtgcatagtaaagcaacttggattaactgctctacctcat---------------catca 1436435  T
Q  250 tcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtcctttaacctg 320  Q
    |||| |||||||||||| | |||||| ||||||||||| |||||||| ||| | |||||||||||||||||    
T  1436434 tcataatttccctttaactctgcatctaccagtgtttcgaacttcttctctttaagaagtcctttaacctg 1436364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 1449797 - 1449710
Alignment:
Q  33 tatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctcccatttttca 120  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||||||| | | |||| |||||||||||||||||||||||||||    
T  1449797 tatccaatttgcattagggtgatgcatgcggttgttgttaaaatcttgtcgatgcatctcttctttctgccattgctcccatttttca 1449710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 21017416 - 21017465
Alignment:
Q  247 tcatcattatttccctttaattttgcatccaccagtgtttccaacttctt 296  Q
    ||||||| |||||||||||| | |||||||||||||||||| ||||||||    
T  21017416 tcatcataatttccctttaactctgcatccaccagtgtttcaaacttctt 21017465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1456811 - 1456779
Alignment:
Q  1 gaatctacttgggtatgtgaagttgaatctact 33  Q
    |||||||||||| ||||||||||||||||||||    
T  1456811 gaatctacttggatatgtgaagttgaatctact 1456779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 43826024 - 43826142
Alignment:
Q  109 tcccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccactt 208  Q
    |||||| |||| ||||| ||||||||||||||||||||||| || || ||||| ||||| |  |||||||| |||  ||| |||||||| |  || || |    
T  43826024 tcccatctttctgccaagccatcgccttcaagcattctcactacatctgacatctttggccggtccataggcgaaccttgcgtgcatagcagcgcaacct 43826123  T
Q  209 ggattaacttctctacctc 227  Q
    |||||||||  ||||||||    
T  43826124 ggattaactgttctacctc 43826142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University