View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_16 (Length: 362)
Name: NF20559_low_16
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 5847333 - 5847560
Alignment:
| Q |
21 |
atcaagtcatcgtagagtatatctgaacgaagagagttatagagacctaataatgtttgtcgtgtgtgaatatgaccagaaattcttatgaactgttcca |
120 |
Q |
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| T |
5847333 |
atcaagtcatcgtagagtatatctcaacgaagagagtta--gagacctaataatgtttgtcgtgtgtgaatatgaccagaaattcttatgaactgttcca |
5847430 |
T |
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| Q |
121 |
tagagacaaaacaactaaacggctgatcctcgtgtactcttcacattcacaatctcccaatctttcaattcaatgaatttagcagagacagtacggctca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
5847431 |
tagagacaaaacaactaaacggctgatcctcgtgtactcttcacattcacaatctcccaatcttccaattcaatgaatttagcagagacagtacggcata |
5847530 |
T |
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| Q |
221 |
atgtatacaaatatttggacacaaacacat |
250 |
Q |
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| T |
5847531 |
atgtatacaaatatttagacacaaacacat |
5847560 |
T |
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