View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_18 (Length: 313)
Name: NF20559_low_18
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_18 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 138 - 313
Target Start/End: Original strand, 39902245 - 39902420
Alignment:
| Q |
138 |
ctacctcaatattgcttttcaacctgtttggaggtatgatccatttgaccaaatctacccgtggccaagctacaatcgtgtttgagtcttgcaatctcat |
237 |
Q |
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| T |
39902245 |
ctacatcaatattgcttttcaacctgtttggaggtatgatccatttgaccaaatctacccgtggccaagctacaatcgtgtttgagtcttgcaatctcat |
39902344 |
T |
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| Q |
238 |
ccattgccattgattgaggaatgcataatgttgatatatagtcctaacaacttcatcaatctcttctcaaagcttc |
313 |
Q |
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| T |
39902345 |
ccattgccattgattgaggaatgcataatgttgatatatagtcctaacaacttcatcaatctcttctcaaagcttc |
39902420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 39902013 - 39902097
Alignment:
| Q |
1 |
aaactcaatcatcgagtttggataaaccaaccaaaataagataaaatttatgcatcaagtttaaaatcaacatcttcaacctcat |
85 |
Q |
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| T |
39902013 |
aaactcaatcatcgagtttggataaaccaaccaaaataagataaaatttatgcatcaagtttaaaatcaacatcttcaacctcat |
39902097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 39902113 - 39902147
Alignment:
| Q |
107 |
cttttagtgaacccatgagcctacgcctcttctac |
141 |
Q |
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| T |
39902113 |
cttttagtgaacccatgagcctacgcctcttctac |
39902147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 39901979 - 39902012
Alignment:
| Q |
81 |
ctcatgaaatgtaataattagtttgccttttagt |
114 |
Q |
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| T |
39901979 |
ctcatgaaatgtaataattagtttgccttttagt |
39902012 |
T |
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