View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_19 (Length: 313)
Name: NF20559_low_19
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_19 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 1481453 - 1481755
Alignment:
| Q |
11 |
ggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcgtcgtacgggtcaaatcttagtaa |
110 |
Q |
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| T |
1481453 |
ggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcgtcgcacgggtcaaatcttagtaa |
1481552 |
T |
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| Q |
111 |
ttaattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcact |
210 |
Q |
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| T |
1481553 |
ttgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcact |
1481652 |
T |
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| Q |
211 |
gaaacaagtatagtgagcgcaaccctctttgcatgctgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttgg |
310 |
Q |
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| T |
1481653 |
gaaacaagtatagtgagcgcaaccctctttgcatgctgccatgtttatggctacattttcagtagtgatacggaggttgttaaatacgttactgtcttgg |
1481752 |
T |
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| Q |
311 |
ctc |
313 |
Q |
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| T |
1481753 |
ctc |
1481755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 120 - 313
Target Start/End: Original strand, 49190892 - 49191085
Alignment:
| Q |
120 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagt |
219 |
Q |
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| T |
49190892 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagt |
49190991 |
T |
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| Q |
220 |
atagtgagcgcaaccctctttgcatgctgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctc |
313 |
Q |
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| T |
49190992 |
atagtgagcgcaaccctctttgcatgccgccatgtttatggctacattttcagtagtgatacagaagttgttaaatacgtcactgtcttggctc |
49191085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 1850610 - 1850550
Alignment:
| Q |
13 |
atgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgatttt |
73 |
Q |
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| T |
1850610 |
atgcatattaagataattttaataataatattgtatacttattaagtttgtttgtgatttt |
1850550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 30475886 - 30475857
Alignment:
| Q |
133 |
gtttcaaatgaattaggagctggtaatcca |
162 |
Q |
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| T |
30475886 |
gtttcaaatgaattaggagctggtaatcca |
30475857 |
T |
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