View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_20 (Length: 289)
Name: NF20559_low_20
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 53555303 - 53555037
Alignment:
| Q |
17 |
tatgcatgcggttttcatagacgtagattcaagttgtgatttgacctatagtactttctattaacaaaa-----------cttnnnnnnngtatttaaaa |
105 |
Q |
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| T |
53555303 |
tatgcatgcggttttcatagacgtagattcaagttgtgatttgacctatagtactttctattaacaaaatttaaactaaacttaaaaaatgtatttaaaa |
53555204 |
T |
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| Q |
106 |
ataaataataatatgatttctaagtaactatatatcacttgtgaagatatgcattgatcctcatacattgtagctagctctctaaaccctcatagattct |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
53555203 |
ataaataataatatgatttctaagtaactatatatcacttgtgaaaatatgcattgatcctcatacattgtagctagctctctaaaccctaatatattct |
53555104 |
T |
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| Q |
206 |
agctagctctaaacattccataaagaaagagagagagaaactacgagctctctaaatatatattttt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |
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| T |
53555103 |
agctagctctaaacattccataaagaaagagagagaaaaactactagttctctaaatatatattttt |
53555037 |
T |
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