View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_24 (Length: 272)
Name: NF20559_low_24
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 30981596 - 30981834
Alignment:
| Q |
13 |
aatatctaaggccactcctctacttgtannnnnnnnncttcttaattttaattataatattcttgtatttatccattcaatttgtccttctctccctaaa |
112 |
Q |
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| T |
30981596 |
aatatctaaggcccctcctctacttgtattttttt--cttcttaattttaattataatattcttgtatttatccattcaatttgtccttctctccctaaa |
30981693 |
T |
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| Q |
113 |
gaattggaagagaattaattcatctgacgacatatatatcaactccttctttaaaaaataataatatatcaaactcctaatattttacttgcaagttgga |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
30981694 |
gaattggaagagaatgaattcatctgacgacatatatatcaactccttctttaaaaaataataatatatc-aactcctaata-tttacttgcaagttgga |
30981791 |
T |
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| Q |
213 |
caaaacaccatacaaatatttctgtacaccaaaagcttaagaa |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30981792 |
caaaacaccatacaaatatttctgtacaccaaaagcttaagaa |
30981834 |
T |
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