View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_25 (Length: 271)
Name: NF20559_low_25
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 38779373 - 38779115
Alignment:
| Q |
1 |
atgaaaataaggaaggtagagaactcatttagaacagtcaaacaaaaatttgagaaagcaggagctccttttcctcctcagcagcaagaaataaagagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779373 |
atgaaaataaggaaggtagagaactcatttagaacagtcaaacaaaaatttgagaaagcaggagctccttttcctcctcagcagcaagaaataaagagaa |
38779274 |
T |
|
| Q |
101 |
gccatgagaaaacaaaacatgtcaagcaattggaagctcaccagtcactgataaccac---ctttcagggaggaccaccacaatctgtgtcctgtggttc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38779273 |
gccatgagaaaacaaaacatgtcaagcaattggaagctcaccagtcactgataaccaccttctttcagggaggaccaccacaatctgtgtcctgtggttc |
38779174 |
T |
|
| Q |
198 |
aatcaacctaataatgtccttgccttccaaaacttggccaaatacaacatgtctctgat |
256 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779173 |
aatcaacctaacaatgtccttgccttccaaaacttggccaaatacaacatgtctctgat |
38779115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 52934396 - 52934656
Alignment:
| Q |
1 |
atgaaaataaggaaggtagagaactcatttagaacagtcaaacaaaaatttgagaaagcaggagctccttttcctcctcagcagcaagaaataaagagaa |
100 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||| | |||| ||||| ||||||||||||| || |||||||| |
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| T |
52934396 |
atgaaaataagagaggtactgaactcatttagaacagtcaaacaaaaattcgagagagcggtagcttctttttatcctcagcagcaacaagcaaagagaa |
52934495 |
T |
|
| Q |
101 |
gccatgagaaaacaaaacatgtcaagcaattggaagctcac--cagtcactga---taaccacctttcagggaggaccaccacaatctgtgtcctgtggt |
195 |
Q |
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|||||||||| |||||||||||||||||||||||||||| | |||||||||| | ||| |||| |||| || |||||| ||| || ||||||| | |
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| T |
52934496 |
gccatgagaagacaaaacatgtcaagcaattggaagctcgccacagtcactgattgtcaccttctttaggggacgatcaccacgatcagtctcctgtgat |
52934595 |
T |
|
| Q |
196 |
tcaatcaacctaataatgtccttgccttccaaaacttggccaaatacaacatgtctctgat |
256 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
52934596 |
tcaatcaacctaacaatgtccatgccttccaaaacttggccgaatacaacatgcctctgat |
52934656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 52942031 - 52942291
Alignment:
| Q |
1 |
atgaaaataaggaaggtagagaactcatttagaacagtcaaacaaaaatttgagaaagcaggagctccttttcctcctcagcagcaagaaataaagagaa |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||| | |||| ||||| ||||||||||||| || |||||||| |
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| T |
52942031 |
atgaaaataagagaggtactgaactcatttagaacagtcaaacaaaaattcgagagagcggtagcttctttttatcctcagcagcaacaagcaaagagaa |
52942130 |
T |
|
| Q |
101 |
gccatgagaaaacaaaacatgtcaagcaattggaagctcac--cagtcactga---taaccacctttcagggaggaccaccacaatctgtgtcctgtggt |
195 |
Q |
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|||||||||| |||||||||||||||||||||||||||| | |||||||||| | ||| |||| |||| || |||||| ||| || ||||||| | |
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| T |
52942131 |
gccatgagaagacaaaacatgtcaagcaattggaagctcgccacagtcactgattgtcaccttctttaggggacgatcaccacgatcagtctcctgtgat |
52942230 |
T |
|
| Q |
196 |
tcaatcaacctaataatgtccttgccttccaaaacttggccaaatacaacatgtctctgat |
256 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
52942231 |
tcaatcaacctaacaatgtccatgccttccaaaacttggccgaatacaacatgcctctgat |
52942291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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