View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_31 (Length: 238)
Name: NF20559_low_31
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 12437329 - 12437186
Alignment:
| Q |
1 |
ttgcaatatttattttacaattaaataatgaaatctcaaacttagatatgatcattgtatacatctaatatcaccattggaaaagatttcacatgccaat |
100 |
Q |
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| T |
12437329 |
ttgcaatatttattttacaattaaataatgaaatctcaaacttagatatgatctttgtatacatctaatatcaccattggaaaagatttcacatgccaat |
12437230 |
T |
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| Q |
101 |
ggaagtatataaaacacaccacaaagaaaacaccatgagtcaca |
144 |
Q |
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| T |
12437229 |
ggaagtatataaagcacaccacaaagaaaacaccatgagtcaca |
12437186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 12437158 - 12437104
Alignment:
| Q |
172 |
atatctcaaacaattttacaagttttgaggaatcttgaaaaatatgtctgaagtg |
226 |
Q |
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| T |
12437158 |
atatctcaaacaattttacaagtttcgtggaatcttaaaaaatatgtctgaagtg |
12437104 |
T |
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