View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20559_low_5 (Length: 523)
Name: NF20559_low_5
Description: NF20559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20559_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 41921158 - 41920650
Alignment:
| Q |
1 |
ctgccatccgagtcacgacataaaagtttctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttagattgcgatgctctaaatatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41921158 |
ctgccatccgagtcacgacataaaagtttctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttaaattgcgatgctctaaatatt |
41921059 |
T |
|
| Q |
101 |
aaagattgtgacacaatcatgattaaaaaactagttgaatgctaccaaataactaagacaatagtactgatttatacctgtcttcaatcctgaatcgagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41921058 |
aaagattgtgacacaatcatgattaaaaaactagttgaatgctatcaaataactaagacaatagtactaatttatacctgtcttcaatcctgaatcgagg |
41920959 |
T |
|
| Q |
201 |
cttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaata |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920958 |
cttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaata |
41920859 |
T |
|
| Q |
301 |
acagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaagtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920858 |
acagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaagtta |
41920759 |
T |
|
| Q |
401 |
acaaagttttacttgcataacaagtttcttgtatttaaagggaaa-ttggcttatgtatttgtacagcatgttacacaggagtaggtaaaaaatgtatac |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||| |||||| |
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| T |
41920758 |
acaaagttttacttgcataacaagtttcttgtatttaaagggaaatttggcttatgtatttgtacagcatgttacacagtagtagttgaaaaaggtatac |
41920659 |
T |
|
| Q |
500 |
atttaaata |
508 |
Q |
| |
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||||||||| |
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| T |
41920658 |
atttaaata |
41920650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 171 - 375
Target Start/End: Original strand, 26829762 - 26829966
Alignment:
| Q |
171 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
270 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
|
| Q |
271 |
ttcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtg |
370 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||||||||| || ||| ||||||||| |||||| |||| |||||||||||| |||||||||| || |
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| T |
26829862 |
ttcactctactagcctctagtagaccaataatcgttgcctttgttcgatgaagagacatggtattctcgaataaaatccaaaagacaagtaaatggaatg |
26829961 |
T |
|
| Q |
371 |
acctg |
375 |
Q |
| |
|
||||| |
|
|
| T |
26829962 |
acctg |
26829966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 230 - 376
Target Start/End: Original strand, 26782932 - 26783078
Alignment:
| Q |
230 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacat |
329 |
Q |
| |
|
|||| ||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||| || | |||||| |
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| T |
26782932 |
ccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgctcgatttaaagacat |
26783031 |
T |
|
| Q |
330 |
gacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
376 |
Q |
| |
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| ||||||||| ||||||||||| || | |||||| | |||||||| |
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| T |
26783032 |
ggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 170 - 376
Target Start/End: Original strand, 26789245 - 26789451
Alignment:
| Q |
170 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
269 |
Q |
| |
|
|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
|
| Q |
270 |
attcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagt |
369 |
Q |
| |
|
|||||||| ||||| ||| || |||||||||| ||||| |||| || ||| |||| ||| ||| ||||| |||| |||||||| | ||||| || | |
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|
| T |
26789345 |
attcactctactagtctctagcagaccaataattgttgcttttgttcgatgtagagctatggtattttcaaagagaacccaaaagataactaaatagaat |
26789444 |
T |
|
| Q |
370 |
gacctga |
376 |
Q |
| |
|
||||||| |
|
|
| T |
26789445 |
gacctga |
26789451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 232 - 355
Target Start/End: Original strand, 26816137 - 26816260
Alignment:
| Q |
232 |
ttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatga |
331 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| || ||| |||| ||| |
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| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttgttcgatgtagagctatgg |
26816236 |
T |
|
| Q |
332 |
cattctcaaatagaatccaaaaga |
355 |
Q |
| |
|
||| ||||| |||| |||||||| |
|
|
| T |
26816237 |
tattttcaaagagaacccaaaaga |
26816260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 2301264 - 2301218
Alignment:
| Q |
230 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcact |
276 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
2301264 |
ccttaagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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