View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2055_high_1 (Length: 264)

Name: NF2055_high_1
Description: NF2055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2055_high_1
NF2055_high_1
[»] chr3 (2 HSPs)
chr3 (1-254)||(12366209-12366462)
chr3 (87-254)||(12346074-12346241)
[»] chr4 (1 HSPs)
chr4 (76-244)||(18635740-18635908)
[»] chr5 (2 HSPs)
chr5 (43-242)||(12470240-12470439)
chr5 (59-152)||(18904781-18904873)
[»] chr2 (3 HSPs)
chr2 (160-254)||(19965334-19965428)
chr2 (9-93)||(19965441-19965525)
chr2 (57-209)||(36680927-36681081)
[»] chr1 (2 HSPs)
chr1 (76-208)||(6314492-6314624)
chr1 (29-137)||(4695278-4695385)
[»] chr7 (2 HSPs)
chr7 (108-171)||(27408657-27408720)
chr7 (29-73)||(44669439-44669483)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 12366209 - 12366462
Alignment:
Q  1 aatgaaataaatcctagtgtgttttgtgaaaaacattttcttctaaatttctctcttctttctggaagctctaaattattattttcatatcataagttcc 100  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||    
T  12366209 aatgaaataaatcctagtgtgttttatgaaaaacatgttcttctaactttctctcttctttctgaaagctctaagttattatgttcatatcataagtccc 12366308  T
Q  101 tctatagagatgcaagtatgctctacactcgcctcaaaaatgaggatcttgtatatcagaaaacatctgactagtgatccatgctacggtcctctctatt 200  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12366309 tctatagagatgcaagtatgctctacactcgccttagaaatgagcatcttgtgtatcagaaaacatctgactagtgatccatgctacggtcctctttatt 12366408  T
Q  201 atgagatgacagtcttaattgataatctgtgcttcagactttttcatgcctatg 254  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  12366409 atgagatgccagtcttaattgataatctgtgcttgagactttttcatgcctatg 12366462  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 87 - 254
Target Start/End: Original strand, 12346074 - 12346241
Alignment:
Q  87 atatcataagttcctctatagagatgcaagtatgctctacactcgcctcaaaaatgaggatcttgtatatcagaaaacatctgactagtgatccatgcta 186  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12346074 atatcataagtccctctatagagatgcaagtatgctctacactcgcctcagaaatgaggatcttgtgtatcagaaaacatctgactagtgatccatgcta 12346173  T
Q  187 cggtcctctctattatgagatgacagtcttaattgataatctgtgcttcagactttttcatgcctatg 254  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  12346174 tggtcctctctattatgagatgccagtcttaattgataatctgtgcttgagactttttcatgcctatg 12346241  T

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Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 18635908 - 18635740
Alignment:
Q  76 ttattattttcatatcataagttcctctatagagatgcaagtatgctctacactcgcctcaaaaatgaggatcttgtatatcagaaaacatctgactagt 175  Q
    ||||||| |||||||||||| || ||| |||||||||| ||||| |||||||||| ||||  ||||||||||||||  ||||||||||||||||||||      
T  18635908 ttattatcttcatatcataattttctccatagagatgctagtattctctacactcacctctgaaatgaggatcttgcgtatcagaaaacatctgactata 18635809  T
Q  176 gatccatgctacggtcctctctattatgagatgacagtcttaattgataatctgtgcttcagacttttt 244  Q
     |||||| ||||| |||||| ||||||| |||| || | ||||||||||||||||| || |||||||||    
T  18635808 tatccatactacgatcctctatattatgggatgccaattttaattgataatctgtgattgagacttttt 18635740  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 12470439 - 12470240
Alignment:
Q  43 ctaaatttctctcttctttctggaagctctaaattattattttcatatcataagttcctctatagagatgcaagtatgctctacactcgcctcaaaaatg 142  Q
    ||||||||||||||| | |||| || |||||  |||| || ||||||| || | |||  ||||||||||||||||| ||||||||||||||||| ||| |    
T  12470439 ctaaatttctctcttatgtctgaaaactctag-ttatgatgttcatattattaattcaactatagagatgcaagtacgctctacactcgcctcagaaacg 12470341  T
Q  143 agga-tcttgtatatcagaaaacatctgactagtgatccatgctacggtcctctctattatgagatgacagtcttaattgataatctgtgcttcagactt 241  Q
    |||| | |||| |||||||||||||||||||| ||||||||| |||  ||||||||||||||| |||| ||||||||||| || | |||| || ||||||    
T  12470340 aggacttttgtgtatcagaaaacatctgactattgatccatgttacattcctctctattatgaaatgatagtcttaattgctagtttgtggttgagactt 12470241  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 18904781 - 18904873
Alignment:
Q  59 tttctggaagctctaaattattattttcatatcataagttcctctatagagatgcaagtatgctctacactcgcctcaaaaatgaggatcttgt 152  Q
    |||||| ||||||||  ||||||| ||||| |||  | |||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||    
T  18904781 tttctgaaagctctag-ttattatattcatgtcagtaattcctctatatagatgcaagtatgctctacactcgcctcataaatgacgatcttgt 18904873  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 19965428 - 19965334
Alignment:
Q  160 aaaacatctgactagtgatccatgctacggtcctctctattatgagatgacagtcttaattgataatctgtgcttcagactttttcatgcctatg 254  Q
    ||||||||||||||  ||||||||||||||| |||||||||||| |||| ||||||||||||| ||| ||||||| ||||||||| |||||||||    
T  19965428 aaaacatctgactatagatccatgctacggtgctctctattatgggatgtcagtcttaattgacaatttgtgcttgagacttttttatgcctatg 19965334  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 19965525 - 19965441
Alignment:
Q  9 aaatcctagtgtgttttgtgaaaaacattttcttctaaatttctctcttctttctggaagctctaaattattattttcatatcat 93  Q
    ||||||||||||||||   ||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||  |||||||||    
T  19965525 aaatcctagtgtgtttcaagaaaaacatgttcttctaaatttctctcttatttctgaaagctctaagttattatgatcatatcat 19965441  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 36680927 - 36681081
Alignment:
Q  57 tctttctggaagctctaaattattattttcatatcataagttcctctatagagatgcaag---tatgctctacactcgcctcaaaaatgaggatcttgta 153  Q
    |||||||| ||||||||  ||||||| ||||| || | | ||||||||||||||||||||    |||||||| |||||||||| ||||| |||||||||     
T  36680927 tctttctgaaagctctag-ttattatgttcatgtctttaattcctctatagagatgcaagcttgatgctctatactcgcctcataaatgcggatcttgtg 36681025  T
Q  154 tatcagaaaacatctgactagtgatccatgctacggtcctctctattatgagatga 209  Q
    ||||| |||| || |||||| ||||||||| || | || ||||| ||| |||||||    
T  36681026 tatcataaaatatttgactattgatccatgttatgttcttctcttttacgagatga 36681081  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 6314492 - 6314624
Alignment:
Q  76 ttattattttcatatcataagttcctctatagagatgcaagtatgctctacactcgcctcaaaaatgaggatcttgtatatcagaaaacatctgactagt 175  Q
    ||||||| |||||||||| | || ||||||||||||| |||||||| || ||||| ||| | |||||| |||||||||||| | ||||||| |||||| |    
T  6314492 ttattatgttcatatcattaatttctctatagagatgtaagtatgcgctccactcaccttagaaatgacgatcttgtatattaaaaaacatatgactatt 6314591  T
Q  176 gatccatgctacggtcctctctattatgagatg 208  Q
     ||| ||| || |||||||||||||| ||||||    
T  6314592 aatctatgttatggtcctctctattacgagatg 6314624  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 4695385 - 4695278
Alignment:
Q  29 aaaaacattttcttctaaatttctctcttctttctggaagctctaaattattattttcatatcataagttcctctatagagatgcaagtatgctctacac 128  Q
    |||||||| ||||||||||||||| |||||||| |  ||||||||  |||||||  |||| |||| | ||||||||||||||| |||| | |||| ||||    
T  4695385 aaaaacatgttcttctaaatttctatcttctttttaaaagctctag-ttattatggtcatgtcattaattcctctatagagatacaaggacgctcaacac 4695287  T
Q  129 tcgcctcaa 137  Q
    |||||||||    
T  4695286 tcgcctcaa 4695278  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 27408657 - 27408720
Alignment:
Q  108 agatgcaagtatgctctacactcgcctcaaaaatgaggatcttgtatatcagaaaacatctgac 171  Q
    ||||||||||||| |||||||||||||| ||||| | |||||||||||||| | ||||||||||    
T  27408657 agatgcaagtatgttctacactcgcctcgaaaataaagatcttgtatatcaaagaacatctgac 27408720  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 44669439 - 44669483
Alignment:
Q  29 aaaaacattttcttctaaatttctctcttctttctggaagctcta 73  Q
    |||||||| | |||||||||||||||||||||| || ||||||||    
T  44669439 aaaaacatgtccttctaaatttctctcttctttatgaaagctcta 44669483  T

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