View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20560_high_3 (Length: 443)

Name: NF20560_high_3
Description: NF20560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20560_high_3
NF20560_high_3
[»] chr1 (2 HSPs)
chr1 (19-433)||(47192731-47193144)
chr1 (107-146)||(3288021-3288060)
[»] chr8 (4 HSPs)
chr8 (18-147)||(16659820-16659948)
chr8 (18-73)||(1669026-1669081)
chr8 (18-73)||(22015834-22015889)
chr8 (18-73)||(38520369-38520424)
[»] chr4 (5 HSPs)
chr4 (18-73)||(45144939-45144994)
chr4 (18-73)||(21356064-21356119)
chr4 (18-73)||(23217363-23217418)
chr4 (107-156)||(9816461-9816510)
chr4 (107-150)||(29947676-29947720)
[»] chr3 (3 HSPs)
chr3 (18-73)||(21240056-21240111)
chr3 (18-73)||(52894169-52894224)
chr3 (18-73)||(2337959-2338014)
[»] scaffold0393 (1 HSPs)
scaffold0393 (18-146)||(10626-10753)
[»] chr2 (2 HSPs)
chr2 (18-146)||(3934365-3934492)
chr2 (18-149)||(38974740-38974870)
[»] chr6 (1 HSPs)
chr6 (107-150)||(6807397-6807440)
[»] chr7 (2 HSPs)
chr7 (107-146)||(8363953-8363992)
chr7 (107-150)||(38871468-38871511)
[»] chr5 (3 HSPs)
chr5 (18-73)||(3175164-3175219)
chr5 (112-148)||(3175257-3175293)
chr5 (107-147)||(15302580-15302620)


Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 47192731 - 47193144
Alignment:
Q  19 gttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccaccc 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||       || |||||||||||||||||||||||||||||||||||    
T  47192731 gttttgggttttctcgttgtattggtgttacgtatataggcggcacctctttgtatttttt-ccggtttcttccgtgaatttttgttgtggcggccaccc 47192829  T
Q  119 gaagcttttttgtctggctccgccactggttaaaggatcgttgattgcttaatttagcggcaaataaaaatgtttatgtgaaggatatgatgtctagtag 218  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192830 gaagcttttttgtctgactccgccactggttaaaggatcactgattgcttaatttagcggcaaataaaaatgtttatgtgaaggatatgatgtctagtag 47192929  T
Q  219 tggtttggtaggaggaggatgaagttgaagaagaagtttgtctgtttaggaggaagagttagtaaaggagtgtaagattttactttctaatacttctttg 318  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  47192930 tggtttggtaggaggagaatgaagttgaagaagacgtttgtctgtttaggaggaagagttagtaaaggagtgtaaggtgttactttctaatacttctttg 47193029  T
Q  319 aaggataatggcagatgacatttgaatttgagatcttaatcccggtggtatgttttcatccaaagaatcttacatgttgatatctaattttgaagtaata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193030 aaggataatggcagatgacatttgaatttgagatcttaatcccggtggtatgttttcatccaaagaatcttacatgttgatatctaattttgaagtaata 47193129  T
Q  419 tcatatccccctttg 433  Q
    |||||| ||||||||    
T  47193130 tcatattcccctttg 47193144  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 3288060 - 3288021
Alignment:
Q  107 tggcggccacccgaagcttttttgtctggctccgccactg 146  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  3288060 tggcggccaccccaaacttttttgtctggctccgccactg 3288021  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 16659820 - 16659948
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacc 117  Q
    |||||||||||| |||| || ||||||||||||||| ||| |||||||||||||||       ||||||| |||||  | ||||| |  | || ||||||    
T  16659820 ggttttgggtttcctcggtgaattggtgttacgtatttaggcggcacctctttgta-ttttttcccgttttttccgcaagtttttttaatagcagccacc 16659918  T
Q  118 cgaagcttttttgtctggctccgccactgg 147  Q
    | || |||||||||||||||||||||||||    
T  16659919 ccaaacttttttgtctggctccgccactgg 16659948  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 1669026 - 1669081
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    |||||||||||||||||  | ||||||||||||||| ||| |||||||||||||||    
T  1669026 ggttttgggttttctcggggaattggtgttacgtatttaggcggcacctctttgta 1669081  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 22015834 - 22015889
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    ||||||||||||||||| || ||||||||||||||| |||   |||||||||||||    
T  22015834 ggttttgggttttctcggtgaattggtgttacgtatttaggtagcacctctttgta 22015889  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 38520424 - 38520369
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    |||||||||||||||||  | |||||||||| |||| ||| |||||||||||||||    
T  38520424 ggttttgggttttctcggggaattggtgttatgtatttaggcggcacctctttgta 38520369  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 45144939 - 45144994
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    ||||||||||||||||| || ||||||||||||||| ||| |||||||||||||||    
T  45144939 ggttttgggttttctcggtgaattggtgttacgtatttaggcggcacctctttgta 45144994  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 21356064 - 21356119
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    ||||||||||||||||| || |||||||||| |||| ||| |||||||||||||||    
T  21356064 ggttttgggttttctcggtgaattggtgttaagtatttaggcggcacctctttgta 21356119  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 23217418 - 23217363
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    |||||||||||||||||  | ||||||||||||||| ||| |||||||||||||||    
T  23217418 ggttttgggttttctcggggaattggtgttacgtatttaggcggcacctctttgta 23217363  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 9816461 - 9816510
Alignment:
Q  107 tggcggccacccgaagcttttttgtctggctccgccactggttaaaggat 156  Q
    |||||| ||||| || |||||||||||||||||||||||| | |||||||    
T  9816461 tggcggtcaccccaaacttttttgtctggctccgccactgctcaaaggat 9816510  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 29947676 - 29947720
Alignment:
Q  107 tggcggccacccgaagctttt-ttgtctggctccgccactggtta 150  Q
    |||||||||||| || ||||| |||||||||||||||||||||||    
T  29947676 tggcggccaccccaaactttttttgtctggctccgccactggtta 29947720  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 21240056 - 21240111
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    ||||||||||||||||| || ||||||||||||||| ||| |||||||||||||||    
T  21240056 ggttttgggttttctcggtgaattggtgttacgtatttaggcggcacctctttgta 21240111  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 52894169 - 52894224
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    ||||||||||||||||| || ||||||||||||||| ||| |||||||||||||||    
T  52894169 ggttttgggttttctcggtgaattggtgttacgtatttaggcggcacctctttgta 52894224  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 2338014 - 2337959
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    |||||||||||||||||  | ||||||||||||||| ||| |||||||||||||||    
T  2338014 ggttttgggttttctcggggaattggtgttacgtatttaggcggcacctctttgta 2337959  T

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Target: scaffold0393 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 10753 - 10626
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacc 117  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||| |||||||||||       ||||||| |||||  | ||||| |  | || ||||||    
T  10753 ggttttgggttttctcggtgaattggtgttacgtatttaggcggaacctctttgta-ttttttcccgttttttccgcaagtttttttaatagcagccacc 10655  T
Q  118 cgaagcttttttgtctggctccgccactg 146  Q
    | || ||||||||||||||||||||||||    
T  10654 ccaaacttttttgtctggctccgccactg 10626  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 3934492 - 3934365
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacc 117  Q
    |||||||| |||||||| || ||||||||||||||| ||| |||||||||||||||       ||||||| |||||  | ||||| |  | || ||||||    
T  3934492 ggttttggtttttctcggtgaattggtgttacgtatttaggcggcacctctttgta-ttttttcccgttttttccgcaagtttttttaatagcagccacc 3934394  T
Q  118 cgaagcttttttgtctggctccgccactg 146  Q
    | || ||||||||||||||||||||||||    
T  3934393 ccaaacttttttgtctggctccgccactg 3934365  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 38974870 - 38974740
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacc 117  Q
    ||||||||||||||||| || ||||||||||| ||| ||| |||||||||||||||       ||||||| |||||  |  |||| |  | || ||||||    
T  38974870 ggttttgggttttctcggtgaattggtgttacatatttaggcggcacctctttgta-ttttttcccgttttttccgcaagattttttaatagcagccacc 38974772  T
Q  118 cgaagcttttttgtctggctccgccactggtt 149  Q
    | || |||||||||||||||||||||||||||    
T  38974771 ccaaacttttttgtctggctccgccactggtt 38974740  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 6807397 - 6807440
Alignment:
Q  107 tggcggccacccgaagcttttttgtctggctccgccactggtta 150  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  6807397 tggcggccaccccaaacttttttgtctggctccgccactggtta 6807440  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 8363953 - 8363992
Alignment:
Q  107 tggcggccacccgaagcttttttgtctggctccgccactg 146  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  8363953 tggcggccaccccaaacttttttgtctggctccgccactg 8363992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 38871511 - 38871468
Alignment:
Q  107 tggcggccacccgaagcttttttgtctggctccgccactggtta 150  Q
    |||||||||| | || ||||||||||||||||||||||||||||    
T  38871511 tggcggccactccaaacttttttgtctggctccgccactggtta 38871468  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 3175164 - 3175219
Alignment:
Q  18 ggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 73  Q
    ||||||||||||||||| || ||||||||||||||| ||| | | |||||||||||    
T  3175164 ggttttgggttttctcggtgaattggtgttacgtatttaggcagaacctctttgta 3175219  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 3175257 - 3175293
Alignment:
Q  112 gccacccgaagcttttttgtctggctccgccactggt 148  Q
    ||||||| || ||||||||||||||||||||||||||    
T  3175257 gccaccccaaacttttttgtctggctccgccactggt 3175293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 15302620 - 15302580
Alignment:
Q  107 tggcggccacccgaagcttttttgtctggctccgccactgg 147  Q
    |||||| ||||| || |||||||||||||||||||||||||    
T  15302620 tggcggtcaccctaaacttttttgtctggctccgccactgg 15302580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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