View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20560_high_4 (Length: 437)
Name: NF20560_high_4
Description: NF20560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20560_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 94 - 432
Target Start/End: Original strand, 35803669 - 35804009
Alignment:
| Q |
94 |
atgttgtcgctgctgaattagggatttcgaaatgtaaggaagaaagagtacgtttagggtttctgtccggaatgctgctctctcnnnnnnnnnnnnn--- |
190 |
Q |
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| T |
35803669 |
atgttgtcgctgctgaattagggatttcaaaatgtaaggaagaaagagtacgtttagggtttctgtccggaatgctgctctctctctatatatatatata |
35803768 |
T |
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| Q |
191 |
-tggaagatgatgtgcaaaccctactccctatactcaattccagatttatcattttgtttttgtcccttcctttcagaagagaaaaacaaaattcaagcc |
289 |
Q |
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| T |
35803769 |
ttggaagatgatgtgcaaaccctactccctatactcaattccagatttatcattttgtttttgtcccttcctttcagaagagaaaaacaaaattcaagcc |
35803868 |
T |
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| Q |
290 |
aactttttaattcaaaattgcattatttttgttatcannnnnnnnnnatcagttgcaacttttaaggctctttaacttgccttttgataatgtggtttta |
389 |
Q |
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| T |
35803869 |
aactttttaattcaaaattgcattatttttgttgtca--ttttttttatcagttgcaatttttaaggctctttaacttgccttttgataatgtggtttta |
35803966 |
T |
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| Q |
390 |
tttcttaaaatccctttacaaaagcttgttttctaatattctt |
432 |
Q |
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| T |
35803967 |
tttcttaaaatccctttacaaaagtttgttttctaattttctt |
35804009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 35851255 - 35851167
Alignment:
| Q |
90 |
ggacatgttgtcgctgctgaattagggatttcgaaatgtaaggaagaaagagtacgtt-----tagggtttctgtccggaatgctgctc |
173 |
Q |
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| T |
35851255 |
ggacatgttgtcactgctgaattagggttttggaaatgtatggaagaaagagtacgtttaggttagggtttctctccggaatgctgctc |
35851167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 16833583 - 16833516
Alignment:
| Q |
18 |
gctaccatggtcttgagcttaacaagaaatttgttgaatccggtgaggggctcgaaattgaactcacc |
85 |
Q |
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| T |
16833583 |
gctaccatggtcttcagagtaacaagaaattttttgaatctggtgaggggctggaaattgaactcacc |
16833516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 35851442 - 35851403
Alignment:
| Q |
17 |
agctaccatggtcttgagcttaacaagaaatttgttgaat |
56 |
Q |
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| T |
35851442 |
agctaccatggtctagagcctaacaagaaatttgttgaat |
35851403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 236 - 426
Target Start/End: Complemental strand, 55695874 - 55695696
Alignment:
| Q |
236 |
ttatcatt-ttgtttttgtcccttcctttcagaagagaaaaacaaaattcaagccaactttttaattcaaaattgcattatttttgttatcannnnnnnn |
334 |
Q |
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| T |
55695874 |
ttatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttgt------------- |
55695788 |
T |
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| Q |
335 |
nnatcagttgca-acttttaaggctctttaacttgccttttgataatgtggttttatttcttaaaatccctttacaaaagcttgttttctaat |
426 |
Q |
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| T |
55695787 |
-cattagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaatccctttccaaaaacatgttttctaat |
55695696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 56209939 - 56209997
Alignment:
| Q |
27 |
gtcttgagcttaacaagaaatttgttgaatccggtgaggggctcgaaattgaactcacc |
85 |
Q |
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| T |
56209939 |
gtcttgagcttaacgagaaattttttgaagccggtatggggcacgaaattgaagtcacc |
56209997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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