View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20560_high_6 (Length: 239)
Name: NF20560_high_6
Description: NF20560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20560_high_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 37316419 - 37316639
Alignment:
| Q |
19 |
atctggacttttctgaactcattgatacataaaatttccatcaaattacatttttcgttatcatcgaaaatgttaaattggaacttaataattttcatca |
118 |
Q |
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| T |
37316419 |
atctggacttttctgaacttattgatacataaaatttccatcaaattacatttttcgttatcatcgaaaatgttaaattggaacttaataattttcatca |
37316518 |
T |
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| Q |
119 |
aggcacattacaactgccatattttgtcatattttcgtcatataattaaatcattacacaattgttgtctgtttatctgtcttaacatgcttgtcttaca |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37316519 |
aggcacattacaactgccatattttgtcatatttttgtcatataattaaatcattacacacttgttgtctgtttatctgtcttaacatgcttgtcttaca |
37316618 |
T |
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| Q |
219 |
aaattaaaattataatttatc |
239 |
Q |
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|||||||||||| |||||||| |
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| T |
37316619 |
aaattaaaattaaaatttatc |
37316639 |
T |
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