View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20561_high_12 (Length: 313)
Name: NF20561_high_12
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 4686373 - 4686666
Alignment:
| Q |
1 |
aatgttgtcatacacaaaccaacaaggcttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagattttcaggtgattatcatcct |
100 |
Q |
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| T |
4686373 |
aatgttgtcatacacaaaccaacaaggcttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagattttcaggtgattatcatcct |
4686472 |
T |
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| Q |
101 |
aatactacttttgatgctttgaatcttcaattttcaaatgctacttcttcaactcatgaacaagtttatgatcaagaacatcatgtgggatcttctactt |
200 |
Q |
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| T |
4686473 |
aatactacttttgatgctttgaatcttcaattttcaaatgctacttcttcaactcatgaacaagtttatgatcaagaacatcatgtgggatcttctactt |
4686572 |
T |
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| Q |
201 |
gtgttaattcttccaatgataacaaccataaccaagtacaatttgcaataaatggtcaatactttgactcggtgcaagaagaacaaggcaagtt |
294 |
Q |
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| T |
4686573 |
gtgttaattcttccaatgataacaaccataaccaagtacaatttgcaataaatggtcaatactttgactcggtgcaagaagaacaaggcaagtt |
4686666 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 47846366 - 47846314
Alignment:
| Q |
29 |
ttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagatt |
81 |
Q |
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| T |
47846366 |
ttcaacgatcaagattctattagaaaatttctaatcaagcttggtgggagatt |
47846314 |
T |
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