View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20561_high_19 (Length: 211)
Name: NF20561_high_19
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_high_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 5022429 - 5022609
Alignment:
| Q |
31 |
gtagatgatgtctcacttccgccaataagcatatcctgcaccatgatagtgagatctcatgaagaaagattcaaataatataattccattgggattgaaa |
130 |
Q |
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| T |
5022429 |
gtagatgatgtctcacttccaccaataagcatatcctgcaccatgatagtgagatctcatgaagaaagattcaaataatataattccattgggattgaaa |
5022528 |
T |
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| Q |
131 |
attcaagattctttgaaaatacagattacctctgtctagaatacttcattgtcttgcacattattcttagattagaaaacc |
211 |
Q |
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| T |
5022529 |
attcaagattatttgaaaatacagattacctctgtctagaatacttcattgtcttgcacattattcttagattagaaaacc |
5022609 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 41654360 - 41654304
Alignment:
| Q |
34 |
gatgatgtctcacttccgccaataagcatatcctgcaccatgatagtgagatctcat |
90 |
Q |
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| T |
41654360 |
gatgatgtctcacttccaccaataagcatagtctgcactaggagagtgagatctcat |
41654304 |
T |
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