View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20561_high_9 (Length: 333)
Name: NF20561_high_9
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_high_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 1959571 - 1959888
Alignment:
| Q |
16 |
ctagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatcccta |
115 |
Q |
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| T |
1959571 |
ctagattggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatcccta |
1959670 |
T |
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| Q |
116 |
taatcttaatcactgctgtcctcttacttgatggaatgctacaaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaa |
215 |
Q |
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| T |
1959671 |
taatcttaatcactgctgtcctcttacttgatggaatgctacaaagttatttgaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaa |
1959770 |
T |
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| Q |
216 |
atttccaatcttgaaatatggcaaaagagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttgga |
315 |
Q |
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| T |
1959771 |
atttccaatcttgaaatatggcaaaagagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttgga |
1959870 |
T |
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| Q |
316 |
ggattatcttctgatact |
333 |
Q |
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| T |
1959871 |
ggattatcttctgatact |
1959888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 158 - 333
Target Start/End: Complemental strand, 2023612 - 2023437
Alignment:
| Q |
158 |
aaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatcaag |
257 |
Q |
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| T |
2023612 |
aaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaatatggcaaaggagaagttccatcaag |
2023513 |
T |
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| Q |
258 |
gcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatact |
333 |
Q |
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| T |
2023512 |
gcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatact |
2023437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 2023897 - 2023807
Alignment:
| Q |
62 |
acatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaat |
152 |
Q |
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| T |
2023897 |
acatgatgttcacaaggttcttgtagtcctcaagaaaataggtttgtatccctataatcttaattgttgctgtcctctgacttgatggaat |
2023807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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