View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20561_low_1 (Length: 535)
Name: NF20561_low_1
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 190 - 488
Target Start/End: Complemental strand, 27125140 - 27124834
Alignment:
| Q |
190 |
ttcaacctagacacatacatatggtgaggaggccacctgaaggtgtaagacatattgactt--------gctgcaagttctaccttatggcagtactatg |
281 |
Q |
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| T |
27125140 |
ttcaatctagacagatacatatggtgaggaggccacctgaaggtgtaagacatattgccatattggcatgcggcaagttctaccttatggcagtactatg |
27125041 |
T |
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| Q |
282 |
caggcgagctacatgtcttgcgctagagaatacgcctgcagcccagtagaaggaactcaaccctcgattatggattacccaatccaaaagccacggataa |
381 |
Q |
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| T |
27125040 |
caggcgagccacatgtcatgcgctagagaatatgcatgcagcccagtagcaggaactcaaccctcgattctggattacccaatgcagaagccacggataa |
27124941 |
T |
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| Q |
382 |
gttttcctcctggaccgaataaccctgtaacacatctaccaggacctgatgaagaagaaacgatactagtacttgtttcaagcctttcaaaaggttacaa |
481 |
Q |
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| T |
27124940 |
gttttccacctggaccgaataaccctgtaacacatctaccaggacctgatgaagaagaaacgatactagtacttgtttcaagccttttaaaaggttacaa |
27124841 |
T |
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| Q |
482 |
atctata |
488 |
Q |
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| T |
27124840 |
atctata |
27124834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 27125373 - 27125200
Alignment:
| Q |
16 |
agcttcaactgattttggtgacaattcggtcaccaacaaggtgtgcaaggaaccacaaattaggtagatattgttaatcaataccaatcgagtattgaat |
115 |
Q |
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| T |
27125373 |
agcttcaactgattttggtgacaattcattcaccaacaaggtgtacaaggaaccacaaattatgtagacattgttaatcaagaccaatcgagtattgaat |
27125274 |
T |
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| Q |
116 |
cggtaggacctgaataggttcagccgattcatatacaattggcacattctacctcttattttcaacctaatatttt |
191 |
Q |
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| T |
27125273 |
cggt--gacctcaataggttcagctgattcatatacaattggcacattctacctcctattttcaacctaatatttt |
27125200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 9430623 - 9430674
Alignment:
| Q |
254 |
gcaagttctaccttatggcagtactatgcaggcgagctacatgtcttgcgct |
305 |
Q |
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| T |
9430623 |
gcaagttccaccttatggaagtactatgcaagcgagcaacatgtcttacgct |
9430674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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