View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20561_low_10 (Length: 321)
Name: NF20561_low_10
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 39747598 - 39747322
Alignment:
| Q |
18 |
cacagagtctaggaatgtcagaatttgtcaaagccaccaagagtggataatctggcctcaacgactctttttacagttttgtagaagaagaaaaccaaca |
117 |
Q |
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| T |
39747598 |
cacagagtctaggaatgtcagaatttgtcaaagccaccaagagtggataatttggcctcgacgactctttttacagttttgtagaagaagaaaaccaaca |
39747499 |
T |
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| Q |
118 |
caactataatataggaggcatgataatagagggggagtaatgtaatgctgtttattttcatgtagaatgattctttgacttggttgatattgatgattat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39747498 |
caactataatataggaggcatgataatagagggggagtaatgtaatgctgtttattttcatgtagaatgattcttt-----------tattgatgattat |
39747410 |
T |
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| Q |
218 |
gttgatcattttgaagatggtgaataacttgaactacttgaagaagttcatttctttcacctaaaagttgacttgtattaagtgaaat |
305 |
Q |
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| T |
39747409 |
ggtgatcattttgaagatggtgaataacttgaactacttgaagaagttcatttctttcacctaaaagttgacttgtattaagtgaaat |
39747322 |
T |
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