View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20561_low_11 (Length: 317)
Name: NF20561_low_11
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 41431468 - 41431606
Alignment:
| Q |
19 |
tcaatatcattattggattgaatctacacttgatcaaatttaaacattcaacttgaatcaataaacaccgtatcaatacggaaaaatatacaccgcacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41431468 |
tcaatatcattattggattgaatctacacttgatcaaatctaaacattcaacttgaatcaataaacaccgtatcaagacggaaaaatatacaccgcacaa |
41431567 |
T |
|
| Q |
119 |
agacgagaaatcaaacaaaccatatcacgttaagacact |
157 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
41431568 |
agacgagaaatcaaacaaatcacgtcacgttaagacact |
41431606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 41431713 - 41431765
Alignment:
| Q |
255 |
aaaattgaccattaatcactcaattttggtttgttgaattattcaaacctttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41431713 |
aaaattgaccattaatcactcaattttggtttgttgaattattcaaacctttg |
41431765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 1039864 - 1039896
Alignment:
| Q |
101 |
aaaatatacaccgcacaaagacgagaaatcaaa |
133 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
1039864 |
aaaaaatacaccgcacaaagacgagaaatcaaa |
1039896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 29923035 - 29922964
Alignment:
| Q |
65 |
ttcaacttgaatcaa-taaacaccgtatcaatacggaaaa--atatacaccgcacaaagacgagaaatcaaa |
133 |
Q |
| |
|
|||||| |||||||| ||||||||||| || |||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
29923035 |
ttcaacctgaatcaaataaacaccgtactaagacggaaaatcaaacacaccgcacaaagacgagaaatcaaa |
29922964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University