View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20561_low_13 (Length: 297)
Name: NF20561_low_13
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 46313426 - 46313168
Alignment:
| Q |
17 |
agtatcaaatagttgactggtgatttttagttcagaaactaataacaagnnnnnnnnaacagactaaccaaactaataacaagttattaacatattaaat |
116 |
Q |
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| T |
46313426 |
agtatcaaatagttgacaggtgatttttagttcagaaactaataacaagttttttttaacagactaaccaaactaataacaagttattaacagattaaat |
46313327 |
T |
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| Q |
117 |
ggtctgataatnnnnnnnnnnnnnnnn---cttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaat |
213 |
Q |
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| T |
46313326 |
ggtctgataataaaaaataaaaaaaaaaaacttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaat |
46313227 |
T |
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| Q |
214 |
gataccggccaagacttgttccacctaggaatcgaactaaggttcttccgaacaatgat |
272 |
Q |
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| T |
46313226 |
gataccggccaagacttgttccacctaggaatcgaactagggttcttccgaacaatgat |
46313168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 24978864 - 24978763
Alignment:
| Q |
170 |
ggggaaaggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacctaggaatcgaactaaggttcttccgaaca |
267 |
Q |
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| T |
24978864 |
ggggaagggggccttggtaattcagagttcggctttgaggtaagtataacccggccaagaattgttccacctaggaatcgaactcacgttctcccaaaca |
24978765 |
T |
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| Q |
268 |
at |
269 |
Q |
| |
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|| |
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| T |
24978764 |
at |
24978763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 3195482 - 3195427
Alignment:
| Q |
145 |
ttttggcattaaccctccagtttcc-ggggaaaggggccctggtaatccggagttc |
199 |
Q |
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| T |
3195482 |
ttttggcgttaaccctccagtttccaggggaaagaggccctggtaatccggagttc |
3195427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 49634527 - 49634456
Alignment:
| Q |
145 |
ttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaatgata |
217 |
Q |
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| T |
49634527 |
tttttgcattaaccctccggtt-ccagggaaaggggccttggtaatccggagtttggccttgaggtaaggata |
49634456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 10877274 - 10877154
Alignment:
| Q |
144 |
cttttggcattaaccctccagtttcc-ggggaaa--ggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacc |
238 |
Q |
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| T |
10877274 |
cttttggcattaaccgtccggttcctaggggaaattggggtcctggtgatctagagttcggccatgaggtaaggatagtctggccaagaattgttctaca |
10877175 |
T |
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| Q |
239 |
taggaatcgaactaaggttct |
259 |
Q |
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| T |
10877174 |
taggaatcgaactcaggttct |
10877154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 22506425 - 22506316
Alignment:
| Q |
145 |
ttttggcattaaccctccagtttccgg-ggaaaggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacctag |
241 |
Q |
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| T |
22506425 |
ttttggcgttaaccctccggttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggccaataattgttccaactag |
22506326 |
T |
|
| Q |
242 |
gaatcgaact |
251 |
Q |
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|||||||||| |
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| T |
22506325 |
gaatcgaact |
22506316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 53380971 - 53380934
Alignment:
| Q |
220 |
ggccaagacttgttccacctaggaatcgaactaaggtt |
257 |
Q |
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| T |
53380971 |
ggccaagaattgttccacctaggaatcgaacttaggtt |
53380934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 17931604 - 17931544
Alignment:
| Q |
153 |
ttaaccctccagtt-tccggggaaaggggccctggtaatccggagttcgaccatgaggtaa |
212 |
Q |
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| T |
17931604 |
ttaaccctccggttgtcaggggaagggggccccggtaatccggagttcggccgtgaggtaa |
17931544 |
T |
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