View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20561_low_14 (Length: 276)
Name: NF20561_low_14
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_low_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 39748022 - 39747752
Alignment:
| Q |
5 |
tgatatgaaagatattcatagttggatcagaaccatattaagaagattcaattgaaattgtaaacnnnnnnnnttgtactatttttacaatcccttgttt |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| |
|
|
| T |
39748022 |
tgataagaaagatattcatagttggatcagaaccatattaagaagattcaattgaaattgtaaa-aaaaaaaattgtactattttaacaatcccttattt |
39747924 |
T |
|
| Q |
105 |
ttaggggaaagagatatgataatctaaagtttagtcgagaggtaattgaagtctgataaaaaattgtttcacacataaatcaaaatcttcacattgttga |
204 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
39747923 |
tcaggggaatgagatatgataatctaaagtttagtcgagaggtaagtgaagtctaataaaaaattgtttaacacataaatcaaaatctttacattgttga |
39747824 |
T |
|
| Q |
205 |
tgtcatgcattaaattagtctttaattaatattaatatgtggaaatacctaaatattcagatttaagaccaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39747823 |
tgtcatgcattaaattagtctttaattaatattaatatgtggaaatacctaaatattcagatttaagaccaa |
39747752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 41932077 - 41932045
Alignment:
| Q |
156 |
tctgataaaaaattgtttcacacataaatcaaa |
188 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
41932077 |
tctgataaaaaattgtttcactcataaatcaaa |
41932045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University