View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20561_low_2 (Length: 519)

Name: NF20561_low_2
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20561_low_2
NF20561_low_2
[»] chr5 (7 HSPs)
chr5 (20-262)||(8822400-8822644)
chr5 (392-506)||(8822846-8822960)
chr5 (324-387)||(8822705-8822768)
chr5 (73-160)||(4248964-4249053)
chr5 (84-161)||(5552563-5552641)
chr5 (125-163)||(17053554-17053592)
chr5 (65-101)||(859845-859881)
[»] chr6 (5 HSPs)
chr6 (22-205)||(2043764-2043946)
chr6 (31-101)||(10479671-10479738)
chr6 (75-160)||(23888215-23888298)
chr6 (31-99)||(2391452-2391516)
chr6 (75-160)||(18130550-18130633)
[»] chr4 (4 HSPs)
chr4 (30-113)||(40549349-40549429)
chr4 (22-102)||(7555715-7555792)
chr4 (26-159)||(56094280-56094412)
chr4 (20-118)||(44454802-44454895)
[»] chr1 (10 HSPs)
chr1 (21-116)||(32893737-32893829)
chr1 (31-159)||(27458299-27458426)
chr1 (22-91)||(15947610-15947676)
chr1 (22-91)||(28292397-28292463)
chr1 (22-118)||(4080387-4080480)
chr1 (75-160)||(28226699-28226785)
chr1 (22-63)||(588785-588826)
chr1 (31-102)||(26801320-26801388)
chr1 (31-120)||(31065111-31065198)
chr1 (62-161)||(31082515-31082615)
[»] chr2 (9 HSPs)
chr2 (22-149)||(45707217-45707342)
chr2 (31-102)||(41437433-41437501)
chr2 (73-160)||(10019643-10019733)
chr2 (20-101)||(11862314-11862392)
chr2 (31-119)||(21437054-21437139)
chr2 (31-159)||(33428815-33428940)
chr2 (73-118)||(43300424-43300469)
chr2 (20-60)||(14201513-14201553)
chr2 (73-117)||(43229274-43229318)
[»] chr3 (5 HSPs)
chr3 (32-118)||(36260877-36260960)
chr3 (31-99)||(8795702-8795767)
chr3 (31-91)||(16194242-16194299)
chr3 (26-101)||(29490997-29491069)
chr3 (32-60)||(28552761-28552789)
[»] chr8 (7 HSPs)
chr8 (26-99)||(43120720-43120790)
chr8 (23-118)||(14628929-14629021)
chr8 (66-118)||(14636720-14636772)
chr8 (31-151)||(15175213-15175332)
chr8 (73-117)||(35749021-35749065)
chr8 (60-120)||(4606259-4606319)
chr8 (26-113)||(37295036-37295124)
[»] chr7 (5 HSPs)
chr7 (22-79)||(9003584-9003638)
chr7 (20-58)||(23695674-23695712)
chr7 (26-159)||(34595951-34596082)
chr7 (22-92)||(38362614-38362681)
chr7 (65-101)||(43891443-43891479)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 8822400 - 8822644
Alignment:
Q  20 ggtttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8822400 ggtttgaaatgaaattgatcgattacttgatttataatgttgttattgataatatatttatttgtaaaattaagtgtgaattaggaaacaagaagaaaaa 8822499  T
Q  120 acacgtgtaagtaattatgtttagtgtcataaacactttttaaatatatcacctcaatcttaaacaatcacataaatactttttaacgaaattgaacg-- 217  Q
    |||| |||||||||||||||||  ||||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||      
T  8822500 acacatgtaagtaattatgtttgatgtcataaacactttttgaacatattacctcaatcttaagcaatcacataaatactttttaacaaaattgaacgaa 8822599  T
Q  218 nnnnnnnggataacaatcgtaaacataaccaatttgttgcatttt 262  Q
           |||||||||| |||||||||||||||||||| ||||||    
T  8822600 aaaaaaaggataacaatagtaaacataaccaatttgttacatttt 8822644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 392 - 506
Target Start/End: Original strand, 8822846 - 8822960
Alignment:
Q  392 attatacttatagtatagccaaactaatactagtaggaaaatcgtaatcaacaaaccgtgcacgtccttctcaaacaactagctgcagcagcacaccata 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8822846 attatacttatagtatagccaaactaatactagtaggaaaatcgtaatcaacaaaccgtgcacgtccttctcaaacaactagctacagcagcacaccata 8822945  T
Q  492 atacaattaccagta 506  Q
    |||| ||||||||||    
T  8822946 ataccattaccagta 8822960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 8822705 - 8822768
Alignment:
Q  324 atagatttaacccgccaaagtttttccttctagaaccctccaaaattcaactcacaagtacacc 387  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  8822705 atagatttaacccgccaaagtctttccttctaaaaccctccaaaattcaactcacaagtacacc 8822768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 4249053 - 4248964
Alignment:
Q  73 atatttatttgtaaaattaagtttgaattaggaaacaagaagaaaaaacacgtgta--agtaattatgtttagtgtcataaacacttttt 160  Q
    |||||||| | |||||||||| |||||||   |||||| ||||||||| | || ||  | ||||||||||| ||||||||||||||||||    
T  4249053 atatttatatctaaaattaagattgaattgacaaacaataagaaaaaaaatgtatataaataattatgtttggtgtcataaacacttttt 4248964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 5552563 - 5552641
Alignment:
Q  84 taaaattaagtttgaattaggaaacaagaa-gaaaaaacacgtgtaagtaattatgtttagtgtcataaacacttttta 161  Q
    |||||||||||||||||||| ||| ||||| || |||| |  ||||| |||| ||||||  ||||||||||||||||||    
T  5552563 taaaattaagtttgaattagaaaataagaaggagaaaatatttgtaattaatcatgtttgttgtcataaacacttttta 5552641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 17053592 - 17053554
Alignment:
Q  125 tgtaagtaattatgtttagtgtcataaacactttttaaa 163  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  17053592 tgtaagtaatcatgttttgtgtcataaacactttttaaa 17053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 859845 - 859881
Alignment:
Q  65 ttgatgatatatttatttgtaaaattaagtttgaatt 101  Q
    ||||||| || ||||||||||||||||||||||||||    
T  859845 ttgatgaaatttttatttgtaaaattaagtttgaatt 859881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 2043764 - 2043946
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgtta-ttattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaaaa 120  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| |||||||| | ||||||||||||||||||  ||||||||| | | ||| ||||  ||||    
T  2043764 tttgaaacgaaattcatcaattacttgatttataatattatttattgataaaatatttatttgtaaaatttggtttgaattcgaacacatgaag--aaaa 2043861  T
Q  121 cacgtgtaagtaattatgtttagtgtcataaacactttttaaatatatcacctcaatcttaaacaatcacataaatactttttaa 205  Q
       |||||  |||| ||  ||||||| | ||| |||||||| || |||||||||||| || ||||||||| |||| || ||||||    
T  2043862 tgagtgtatttaatcatacttagtgtaaaaaaaactttttagatctatcacctcaatattgaacaatcacttaaacacgttttaa 2043946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 10479671 - 10479738
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaatt 101  Q
    |||||||||||||||||||||||||||||| |||   || | ||||||||||||||||||| | |||||||    
T  10479671 aaattgatcgattacttgatttataatgttttta---atcaaatatttatttgtaaaattaggcttgaatt 10479738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 23888215 - 23888298
Alignment:
Q  75 atttatttgtaaaattaagtttgaattaggaaacaagaagaaaaaacacgtgtaagtaattatgtttagtgtcataaacacttttt 160  Q
    |||||| |||||| ||| ||||||||| | ||||||||||  |||||| | ||||||||| |||||| ||||||||| ||||||||    
T  23888215 atttatatgtaaatttaggtttgaattcgaaaacaagaag--aaaacatgcgtaagtaatcatgtttggtgtcataagcacttttt 23888298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 2391516 - 2391452
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaa 99  Q
    ||||||||||||||||||||||||||   |||| ||||| | |||||||| |||||||||| |||||||    
T  2391516 aaattgatcgattacttgatttataa---tattgttgatta-atatttatatgtaaaattaggtttgaa 2391452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 18130550 - 18130633
Alignment:
Q  75 atttatttgtaaaattaagtttgaattaggaaacaagaagaaaaaacacgtgtaagtaattatgtttagtgtcataaacacttttt 160  Q
    |||||| |||||| ||| ||||||||| | ||||||||||  |||||| |  |||||||| |||||| ||||||||| ||||||||    
T  18130550 atttatatgtaaatttaggtttgaattcgaaaacaagaag--aaaacatgcataagtaatcatgtttggtgtcataagcacttttt 18130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 40549349 - 40549429
Alignment:
Q  30 gaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaa 113  Q
    |||||||||||||||||||| |||||||   ||| ||||| | ||||||||||||||||||| | ||||||| |||||||||||    
T  40549349 gaaattgatcgattacttgacttataat---attgttgataaaatatttatttgtaaaattatgattgaattcggaaacaagaa 40549429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 7555792 - 7555715
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaatta 102  Q
    |||||||| ||||| ||| ||||||||||||||||   ||||||||||||| ||||||  ||| |||||| | ||||||||    
T  7555792 tttgaaataaaattaatcaattacttgatttataa---tattattgatgatttatttacatgtgaaattaggcttgaatta 7555715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 56094280 - 56094412
Alignment:
Q  26 aaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaaaacacgt 125  Q
    |||| ||||||| | ||||||||||||||||||   || ||||| | |||||||| |||||||||| | || ||||   ||| |||||||| ||| | ||    
T  56094280 aaataaaattgacctattacttgatttataatg---ttgttgatcaaatatttatctgtaaaattaggcttaaattcaaaaataagaagaagaaaaatgt 56094376  T
Q  126 g--taagtaattatgtttagtgtcataaacactttt 159  Q
    |  |||||||| ||||||  ||||||||||||||||    
T  56094377 gtataagtaatcatgtttgatgtcataaacactttt 56094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 44454802 - 44454895
Alignment:
Q  20 ggtttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaa 118  Q
    ||||||||  ||||| |||| |||||||||||||||||||| ||   ||| |  | |||||  ||||||||| ||||||||| ||||||||||||||||    
T  44454802 ggtttgaatcgaaatcgatcaattacttgatttataatgttgtt---gataaactgtttat--gtaaaattatgtttgaatttggaaacaagaagaaaa 44454895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 32893737 - 32893829
Alignment:
Q  21 gtttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaa 116  Q
    ||||||||| ||||||||| ||||||||| |||||||||| || ||||    |||||||| |||||||||||| ||||||| |||||||| |||||    
T  32893737 gtttgaaataaaattgatctattacttgaattataatgttgttgttgaa---atatttatctgtaaaattaagattgaattgggaaacaataagaa 32893829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 27458426 - 27458299
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaa-ttaggaaacaagaagaa-aaaacacgtgta 128  Q
    |||||||  ||||||||||||||||||   ||| ||||| | |||||||| |||||||||| ||||||| |||  |||||||||||| ||||   || ||    
T  27458426 aaattgactgattacttgatttataat---attgttgatcaaatatttatatgtaaaattatgtttgaaattaaaaaacaagaagaagaaaatgtgtata 27458330  T
Q  129 agtaattatgtttagtgtcataaacactttt 159  Q
    |||||| ||||||  ||||||||||||||||    
T  27458329 agtaatcatgtttgatgtcataaacactttt 27458299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 15947676 - 15947610
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaatta 91  Q
    ||||||||||||||||||||  |||||||||||||   || |||| |||| |||||||| ||||||||||    
T  15947676 tttgaaatgaaattgatcgaacacttgatttataa---tactattaatgaaatatttatatgtaaaatta 15947610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 28292463 - 28292397
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaatta 91  Q
    ||||||||||||||||||||  |||||||||||||   || |||| |||| |||||||| ||||||||||    
T  28292463 tttgaaatgaaattgatcgaacacttgatttataa---tactattaatgaaatatttatatgtaaaatta 28292397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 4080387 - 4080480
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaa 118  Q
    |||||||  |||||||||||||||||||||| |||   |||| || |||| |||||||| |||||||||| | || ||||   ||||||||||||||    
T  4080387 tttgaaacaaaattgatcgattacttgatttgtaa---tattgttaatgaaatatttatctgtaaaattatgcttaaattcaaaaacaagaagaaaa 4080480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 28226699 - 28226785
Alignment:
Q  75 atttatttgtaaaattaagtttgaattaggaaacaagaa-gaaaaaacacgtgtaagtaattatgtttagtgtcataaacacttttt 160  Q
    |||||||||||||||| |||||||||| | ||||||||| || ||||   |||||| | || |||||||| || |||||||||||||    
T  28226699 atttatttgtaaaattgagtttgaattcgaaaacaagaaggagaaaatgtgtgtaactgatcatgtttagagtaataaacacttttt 28226785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 588826 - 588785
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttatt 63  Q
    ||||||||||||||||||||||| || ||||||||| |||||    
T  588826 tttgaaatgaaattgatcgattatttaatttataatattatt 588785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 26801388 - 26801320
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaatta 102  Q
    |||||||||||||| |||||||||||   |||| ||||||| || ||||||| |||||||| | ||||||||    
T  26801388 aaattgatcgattatttgatttataa---tattcttgatgaaatgtttatttataaaattatgcttgaatta 26801320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 31065111 - 31065198
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttg-aattaggaaacaagaagaaaaaa 120  Q
    ||||||||| ||||||||||||||||   |||  ||||| | |||||||| |||||||||| | ||| ||||  |||||||||||||||||    
T  31065111 aaattgatctattacttgatttataa---tatcgttgataaaatatttatatgtaaaattaggcttgaaattcagaaacaagaagaaaaaa 31065198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 31082515 - 31082615
Alignment:
Q  62 ttattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaa-aaacacgtgtaagtaattatgtttagtgtcataaacacttttt 160  Q
    ||||| |||| ||||||||   |||||||||||||||||| | ||| ||||||||| |||   |||||| |||| || ||||| || |||||||||||||    
T  31082515 ttatttatgaaatatttatcaataaaattaagtttgaattcgaaaataagaagaaataaatgtgtgtaactaatcatatttagagtaataaacacttttt 31082614  T
Q  161 a 161  Q
    |    
T  31082615 a 31082615  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 45707217 - 45707342
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaa-aaaa 120  Q
    |||||||| |||||||| |||||  ||||||||||    ||| | ||||| |||||||||| |||||||||| ||||||| | ||||| |||||| ||||    
T  45707217 tttgaaataaaattgattgattaactgatttataaa---attgtggatgaaatatttatttctaaaattaagcttgaatttgaaaacacgaagaagaaaa 45707313  T
Q  121 cacgtgtaagtaattatgtttagtgtcat 149  Q
     | |||||||| || ||||||||||||||    
T  45707314 tatgtgtaagttatcatgtttagtgtcat 45707342  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 41437433 - 41437501
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaatta 102  Q
    ||||||||| ||||||| |||||||||||| ||   ||||| |||||||||| |||||||||||||||||||    
T  41437433 aaattgatcaattacttaatttataatgttgtt---gatgaaatatttatttataaaattaagtttgaatta 41437501  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 10019733 - 10019643
Alignment:
Q  73 atatttatttgtaaaattaagtttgaattaggaaacaaga---agaaaaaacacgtgtaagtaattatgtttagtgtcataaacacttttt 160  Q
    ||||||||||||||||||| ||||||||| |||||||| |   | |||||||| ||||||||||  |||||| | || |||||||||||||    
T  10019733 atatttatttgtaaaattaggtttgaatttggaaacaataaataaaaaaaacatgtgtaagtaaccatgtttggagtaataaacacttttt 10019643  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 11862392 - 11862314
Alignment:
Q  20 ggtttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaatt 101  Q
    |||||||||  ||||||||||||||||||||||||||   | || ||||||| |||||||| |||||| ||| | |||||||    
T  11862392 ggtttgaaacaaaattgatcgattacttgatttataa---ttttgttgatgaaatatttatctgtaaagttaggattgaatt 11862314  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 21437054 - 21437139
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaaa 119  Q
    ||||||| ||||||||||||||||||||   || ||||| | |||||||| |||||||||| ||| |||||   ||| |||||||||||    
T  21437054 aaattgaccgattacttgatttataatg---ttgttgatcaaatatttatctgtaaaattaggttggaattcaaaaataagaagaaaaa 21437139  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 33428940 - 33428815
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaaaacacgtgtaag 130  Q
    |||| ||||||||| ||||||||||||   ||| ||||| | |||||||   ||||||||||| |||||||   ||| ||||||||||||  |  |||||    
T  33428940 aaatcgatcgattatttgatttataat---attgttgataaaatatttaaccgtaaaattaagcttgaattcaaaaagaagaagaaaaaaggcaagtaag 33428844  T
Q  131 taattatgtttagtgtcataaacactttt 159  Q
    |||| || |||  ||||||||||||||||    
T  33428843 taatcatatttgatgtcataaacactttt 33428815  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 43300469 - 43300424
Alignment:
Q  73 atatttatttgtaaaattaagtttgaattaggaaacaagaagaaaa 118  Q
    |||||||| ||||||||||||||| |||| | ||||||||||||||    
T  43300469 atatttatatgtaaaattaagtttaaattcgaaaacaagaagaaaa 43300424  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 14201513 - 14201553
Alignment:
Q  20 ggtttgaaatgaaattgatcgattacttgatttataatgtt 60  Q
    |||||||||  |||||||| |||||||||||||||||||||    
T  14201513 ggtttgaaacaaaattgattgattacttgatttataatgtt 14201553  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 43229318 - 43229274
Alignment:
Q  73 atatttatttgtaaaattaagtttgaattaggaaacaagaagaaa 117  Q
    |||||||||||||||||||||||| ||||   |||||||||||||    
T  43229318 atatttatttgtaaaattaagtttaaattcaaaaacaagaagaaa 43229274  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 36260960 - 36260877
Alignment:
Q  32 aattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaa 118  Q
    |||||||||||||||||||||||||   |||| |||| || ||||||||  |||||||||||||||||||   |||||||| |||||    
T  36260960 aattgatcgattacttgatttataa---tattgttgaagaaatatttatccgtaaaattaagtttgaattcaaaaacaagatgaaaa 36260877  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 8795702 - 8795767
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaa 99  Q
    ||||||||| ||||||||||||||||   |||| ||||| | |||||||| |||||||||| |||||||    
T  8795702 aaattgatcaattacttgatttataa---tattgttgatcaaatatttatatgtaaaattatgtttgaa 8795767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 16194242 - 16194299
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaatta 91  Q
    ||||||||||||||||||||||||||   |||| ||||| | |||||||| ||||||||||    
T  16194242 aaattgatcgattacttgatttataa---tattgttgatcaaatatttatatgtaaaatta 16194299  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 29490997 - 29491069
Alignment:
Q  26 aaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaatt 101  Q
    |||| ||||||| |||||| ||||||||||||   ||| | ||||| |||||||| |||||||||||| |||||||    
T  29490997 aaataaaattgaccgattatttgatttataat---attgtcgatgaaatatttatctgtaaaattaagattgaatt 29491069  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 28552789 - 28552761
Alignment:
Q  32 aattgatcgattacttgatttataatgtt 60  Q
    |||||||||||||||||||||||||||||    
T  28552789 aattgatcgattacttgatttataatgtt 28552761  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 43120720 - 43120790
Alignment:
Q  26 aaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaa 99  Q
    |||| ||||||||||||||||||||||||||   |||| ||||| | |||||||| |||||||||| |||||||    
T  43120720 aaataaaattgatcgattacttgatttataa---tattgttgattaaatatttatatgtaaaattaggtttgaa 43120790  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 14629021 - 14628929
Alignment:
Q  23 ttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaa 118  Q
    |||||||  |||||||  |||| ||||||||||||   ||| ||||||| ||||||||||||||||||||| || || ||  ||||||||||||||    
T  14629021 ttgaaatagaattgattaattaattgatttataat---attgttgatgaaatatttatttgtaaaattaagcttaaaatataaaacaagaagaaaa 14628929  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 14636772 - 14636720
Alignment:
Q  66 tgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaa 118  Q
    |||||| ||||||||||||||||||||| |||||||   ||||||||||||||    
T  14636772 tgatgaaatatttatttgtaaaattaagcttgaattcaaaaacaagaagaaaa 14636720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 15175213 - 15175332
Alignment:
Q  31 aaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttg-aattaggaaacaagaagaa-aaaacacgtgta 128  Q
    ||||||||||||||||||||||||||   |||| ||||| | |||||||| ||||| |||| ||||| ||||   |||||||||||| ||||   |||||    
T  15175213 aaattgatcgattacttgatttataa---tattgttgatcaaatatttatatgtaatattaggtttgaaattcaaaaacaagaagaagaaaatgtgtgta 15175309  T
Q  129 agtaattatgtttagtgtcataa 151  Q
    |||||| ||||||  ||||||||    
T  15175310 agtaatcatgtttgatgtcataa 15175332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 35749021 - 35749065
Alignment:
Q  73 atatttatttgtaaaattaagtttgaattaggaaacaagaagaaa 117  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||    
T  35749021 atatttatctgtaaaattaagattgaattaggaaacaataagaaa 35749065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 4606259 - 4606319
Alignment:
Q  60 tattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaaaaaa 120  Q
    |||||||||||| ||| |||  |||||||||| | ||||||||  ||||||||||||||||    
T  4606259 tattattgatgaaatacttacctgtaaaattatgcttgaattaaaaaacaagaagaaaaaa 4606319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 37295036 - 37295124
Alignment:
Q  26 aaatgaaattgatcgattacttgatttata-atgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaa 113  Q
    |||| |||||||| |||||||||||||||| ||  || | ||||||| ||||| |||||||| |||| | ||||||||  |||||||||    
T  37295036 aaataaaattgattgattacttgatttatatataatacttttgatgaaatattcatttgtaacattaggcttgaattaaaaaacaagaa 37295124  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 9003584 - 9003638
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatattta 79  Q
    |||||||| ||||||||| ||||||||||||||||   ||||||||||||| ||||||    
T  9003584 tttgaaataaaattgatcaattacttgatttataa---tattattgatgatttattta 9003638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 23695674 - 23695712
Alignment:
Q  20 ggtttgaaatgaaattgatcgattacttgatttataatg 58  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  23695674 ggtttgaaacgaaatcgatcgattacttgatttataatg 23695712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 34596082 - 34595951
Alignment:
Q  26 aaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaagtttgaattaggaaacaagaagaa-aaaacacg 124  Q
    |||| |||||||  |||||||||||||||||||   || ||||| | |||||||| | |||||||||| |||||||   ||| |||||||| ||||   |    
T  34596082 aaataaaattgacggattacttgatttataatg---ttgttgatcaaatatttatctttaaaattaagcttgaattcaaaaataagaagaagaaaatgtg 34595986  T
Q  125 tgtaagtaattatgtttagtgtcataaacactttt 159  Q
    | |||||||| || |||  ||||||||||||||||    
T  34595985 tataagtaatcatatttgatgtcataaacactttt 34595951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 38362614 - 38362681
Alignment:
Q  22 tttgaaatgaaattgatcgattacttgatttataatgttattattgatgatatatttatttgtaaaattaa 92  Q
    |||||||  |||||||| ||||| ||||||||||||   ||| ||||||| ||||| ||||||||||||||    
T  38362614 tttgaaacaaaattgattgattaattgatttataat---attgttgatgaaatattaatttgtaaaattaa 38362681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 43891479 - 43891443
Alignment:
Q  65 ttgatgatatatttatttgtaaaattaagtttgaatt 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  43891479 ttgatgaaatatttatttgtaaaattaggtttgaatt 43891443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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