View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20561_low_3 (Length: 455)
Name: NF20561_low_3
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 13971626 - 13971200
Alignment:
| Q |
11 |
cagagattggtattatcaaaatagcggaacaaggattccaggacacgtcttacagttgtaccttccttggctaacttcgccatatttagtatgcaaactc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
13971626 |
cagagattggtattatcaaaatagcggaacaaggattccaggacacgtcgtacagttgtaccttccttggctaacttagccatatttagtatacaaactc |
13971527 |
T |
|
| Q |
111 |
ttgaccaaaatccagggttcgtagcatcttccctatggaggagaaatgaagttaacatcaattataacatacgagtaactcaaaacaaaagctaatataa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13971526 |
ttgaccaaaatccagggttcgtagcatcttccctatggaggagaaatgaagttaacatcaattataacatacgagtaactcaaaacgaaagctaatataa |
13971427 |
T |
|
| Q |
211 |
caagaaggacagttacataggcacgttgagttctcctttggcattcactaccattctccatgaataacgccctgtagaattcccattttgagaatcttcc |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13971426 |
caagaatgacagttacataggcacgttgagttctcctttggcattcactaccattctccatgaataacgccctgtagaattcccgttttgagaatcttcc |
13971327 |
T |
|
| Q |
311 |
ttgatatccccgtagttttccaaaacaaccgaaacaacctgagttaacaagagatgcaagctgtcaaatgaaagaagtatacgcgagggtaagacaagag |
410 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13971326 |
ttgatatccccataattttccaaaacaaccgaaacaacctgagttaacaagagatgcaagctgtcaaatgaaagaagtatgccgaagggtaagacaagga |
13971227 |
T |
|
| Q |
411 |
gtaattttaagtgttatacgatgttcg |
437 |
Q |
| |
|
|| | | ||| ||||||| |||||||| |
|
|
| T |
13971226 |
gtgactataactgttataagatgttcg |
13971200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University