View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20561_low_6 (Length: 385)
Name: NF20561_low_6
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20561_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 5023257 - 5023036
Alignment:
| Q |
154 |
agagtaaaattcaatcaacgttaagcacaagagtgtggaaagaaagtatcattgtaggaccatagcccttgatactgttcaaacaacattgcaatagaat |
253 |
Q |
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| T |
5023257 |
agagtaaaattcaatcaacgttaagcacaagagtgtggaaagaaagtatcattgtaggaccatagccctttctactgttcaaacaacattgcaatagcat |
5023158 |
T |
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| Q |
254 |
tagattatgttcatttcacaacctacatgaaactaaaacac-nnnnnnnngtctataatgaatattgtaatagtttcaatatatatatgttggctgatgg |
352 |
Q |
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| T |
5023157 |
tagattatgttcatttcacaacctacatgaacctaaaacacaaaaaaaaagtctataatgaatattgtaatagtttcaatatatatatgttggctgatgg |
5023058 |
T |
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| Q |
353 |
agatggaagtctactgtcctat |
374 |
Q |
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| T |
5023057 |
agatggaagtctactgtcctat |
5023036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5023373 - 5023251
Alignment:
| Q |
1 |
tatgctttataaagaataatgaatgagtctctcaaatcccttcccaactaaagaaagcatccattcattccacttcattttttctgaagtcctccccttc |
100 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5023373 |
tatgctttataaagaataatga----gtctctgaaatcccttcccaactaaagaaagcattcattcattccacttcattttttctgaagtcctccccttc |
5023278 |
T |
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| Q |
101 |
taaactccaaacagaccttaagagtaa |
127 |
Q |
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| T |
5023277 |
taaactccaaacagaccttcagagtaa |
5023251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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