View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20561_low_8 (Length: 353)

Name: NF20561_low_8
Description: NF20561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20561_low_8
NF20561_low_8
[»] chr1 (14 HSPs)
chr1 (140-334)||(12885388-12885582)
chr1 (140-334)||(12955999-12956193)
chr1 (140-334)||(12950243-12950437)
chr1 (140-334)||(12914546-12914740)
chr1 (147-334)||(12921866-12922053)
chr1 (140-334)||(12942585-12942779)
chr1 (140-331)||(12992219-12992410)
chr1 (11-70)||(12885647-12885706)
chr1 (149-334)||(12893677-12893862)
chr1 (201-334)||(12997910-12998042)
chr1 (11-70)||(12942465-12942524)
chr1 (11-70)||(12950123-12950182)
chr1 (24-70)||(12955895-12955941)
chr1 (16-70)||(12922143-12922197)
[»] chr8 (2 HSPs)
chr8 (171-256)||(14073726-14073811)
chr8 (171-219)||(14069378-14069426)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 140 - 334
Target Start/End: Complemental strand, 12885582 - 12885388
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885582 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaaaaggaagtaatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 12885483  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 334  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885482 aagtcaattattatgagagtgttcatggctggaggttcaataaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 12885388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 140 - 334
Target Start/End: Original strand, 12955999 - 12956193
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12955999 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaagaggatgtcatgaaaatattgtggagttgaaaatggggagaaagtcatggttcgtaa 12956098  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 334  Q
    |||| || ||||| |||||| ||  |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||    
T  12956099 aagtgaactattacgagagtatttgtggctgtaggttcagtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgt 12956193  T

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Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 140 - 334
Target Start/End: Original strand, 12950243 - 12950437
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||||||||| |||| |||||||||||||||||||   || || ||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  12950243 ttttgtttgtatttgcagggtgtgccaaaggagtttatgaaaagaggatgtaatgaaaatattgtggagttaaaaatggggagaaagtcatggtttgtaa 12950342  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 334  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||||||| |||||||||| ||| |||||||||| |||||||||| ||||||    
T  12950343 aagtcaattattatgagagtattcatggctgcagattcagtaagggatggacaaaatttatgaaagcatgcaaagtgaagattggagacacttgt 12950437  T

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Target: chr1; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 140 - 334
Target Start/End: Complemental strand, 12914740 - 12914546
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||  || || |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  12914740 ttttgtttgtatctgcagtgtgtaccaaaggagtttatgaaaaaaggatgtaatgaaaatattgtggagttgaaaatggggagaaagtcatggtttgtaa 12914641  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 334  Q
    ||||||||| ||||  |||| ||  |||||| |||||||||||||| |||||| |||||||| ||| | ||||||||||||||||||||||||||    
T  12914640 aagtcaatttttatcggagtctttgtggctgtaggttcagtaaaggttggagacaatttatgaaagcaggcaaagtggagattggagatacttgt 12914546  T

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Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 147 - 334
Target Start/End: Complemental strand, 12922053 - 12921866
Alignment:
Q  147 tgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaa 246  Q
    |||||||||||| |||||||||||||||||||||     ||||||||||||||||| ||||||||||| ||||  || ||||||||||||||||||||||    
T  12922053 tgtatttgcagactgtaccaaaggagtttatgaacggaggaagtcatgaaaatattttggagttgaaagtggggggacagtcatggttcgtaaaagtcaa 12921954  T
Q  247 ttattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 334  Q
    |||||| ||||||||||   |||| ||||| |||||||| ||||||||||| ||| ||| ||||||||||||||| ||||||||||||    
T  12921953 ttattacgagagtgttcggagctgcaggtttagtaaaggttggagaaaattcatgaaagcatgcaaagtggagatcggagatacttgt 12921866  T

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Target: chr1; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 140 - 334
Target Start/End: Original strand, 12942585 - 12942779
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||   || || |||||||||| ||||| |||||||||||  |||||||||||| |||||    
T  12942585 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaaggggatgtaatgaaaatatcgtggaattgaaaatggggggaaagtcatggtacgtaa 12942684  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 334  Q
    |||| || |||||||| ||| ||  |||||| |||||| ||||||| |||||| |||||||| ||| ||||||||||||||||||||||| ||||    
T  12942685 aagtgaactattatgatagtatttgtggctgtaggttcggtaaaggttggagacaatttatgaaagcatgcaaagtggagattggagatatttgt 12942779  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 140 - 331
Target Start/End: Original strand, 12992219 - 12992410
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| |||||||||||||| ||| |||||||||||||||||||   |||||||||||||  || ||||||||||||||||  ||   |||||||  ||||    
T  12992219 ttttgtttgtatttgcagaatgttccaaaggagtttatgaaaagaggaagtcatgaaaactttctggagttgaaaatggggggacgatcatggtctgtaa 12992318  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatact 331  Q
    |||| ||||||||||| ||| ||||||| |  || |||  |  ||| |||||| |||| ||  |||||||||||||||||||||||||||||    
T  12992319 aagtgaattattatgatagtattcatggttatagattctctggaggttggagacaattcataaaagaatgcaaagtggagattggagatact 12992410  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 12885706 - 12885647
Alignment:
Q  11 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885706 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 12885647  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 149 - 334
Target Start/End: Complemental strand, 12893862 - 12893677
Alignment:
Q  149 tatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaatt 248  Q
    |||||||||  ||||||||| || ||||||||||   || ||||||||||| |||||||||||||||| || | | | ||||||||| ||||||| ||||    
T  12893862 tatttgcaggatgtaccaaatgaatttatgaaaagaggatgtcatgaaaatcttgtggagttgaaaatagggatacaatcatggttcataaaagtgaatt 12893763  T
Q  249 attatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgt 334  Q
    |||||   ||| | | |||||| || ||| ||||||| |||||||| ||| ||||| | ||||||||| || ||||| ||||||||    
T  12893762 attatcctagtatccgtggctgtagattcggtaaaggttggagaaattttgtggaaaattgcaaagtgaagtttggaaatacttgt 12893677  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 334
Target Start/End: Original strand, 12997910 - 12998042
Alignment:
Q  201 ttgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttat 300  Q
    |||||||||||||||||||  || | |||||||| |||||||| | |||||||   ||| ||| ||| ||   |||||||||||| |||| |||||||||    
T  12997910 ttgtggagttgaaaatgggg-gacaatcatggtttgtaaaagtgatttattatcctagtattcgtggttgtttgttcagtaaaggttggataaaatttat 12998008  T
Q  301 ggaagaatgcaaagtggagattggagatacttgt 334  Q
    ||||||| |||||||||| |||||| ||||||||    
T  12998009 ggaagaaagcaaagtggaaattggaaatacttgt 12998042  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 12942465 - 12942524
Alignment:
Q  11 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    |||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||    
T  12942465 gatgaagcataacacattcaaggttatggtgaagaacaatgccccggtaggattaattac 12942524  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 12950123 - 12950182
Alignment:
Q  11 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    |||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||    
T  12950123 gatgaagcataacacatttaaggttttggtgaagaacacatccccggtaggattaattac 12950182  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 12955895 - 12955941
Alignment:
Q  24 acattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  12955895 acattcaaggttttggtgaagaacacagctccggtaggattaattac 12955941  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 12922197 - 12922143
Alignment:
Q  16 agcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    |||||||||| || |||||| |||||||||| | || ||||||||||||||||||    
T  12922197 agcataacacgttcaaggttatggtgaagaatagagttccggtaggattaattac 12922143  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 14073726 - 14073811
Alignment:
Q  171 agtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaattattatgag 256  Q
    |||||||||||||  ||  | |||||||||||||| ||||||||||||   || | |||||||||||||||||||| | |||||||    
T  14073726 agtttatgaaaaagggatcttatgaaaatattgtgtagttgaaaatggagggataatcatggttcgtaaaagtcaaattttatgag 14073811  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 14069378 - 14069426
Alignment:
Q  171 agtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatggg 219  Q
    ||||||||||||   || |||||||||||||||||||||| ||||||||    
T  14069378 agtttatgaaaaggggatgtcatgaaaatattgtggagttcaaaatggg 14069426  T

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