View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20562_high_1 (Length: 885)
Name: NF20562_high_1
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 851; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 851; E-Value: 0
Query Start/End: Original strand, 1 - 879
Target Start/End: Complemental strand, 43640238 - 43639360
Alignment:
| Q |
1 |
aatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggttctttca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43640238 |
aatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggttctttca |
43640139 |
T |
|
| Q |
101 |
gagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacatgtttata |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43640138 |
gagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacatgtttata |
43640039 |
T |
|
| Q |
201 |
cattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaaaacaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43640038 |
cattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaaaacaata |
43639939 |
T |
|
| Q |
301 |
cctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaaggtgttaagggtttagtagaag |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639938 |
cctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtggaccctcaaggagtgaaagaaggtgttaagggtttagtagaag |
43639839 |
T |
|
| Q |
401 |
gtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaatttttgtcgtgatgatgaagattttttgaacggtggtgattgtttaagtttgaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639838 |
gtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaatttttgtcgtgatgatgaagattttttgaacggtggtgattgtttaagtttgaa |
43639739 |
T |
|
| Q |
501 |
ttgttctatacctggcgaacaaatgttgggaaggttaataagttttgaagaaaataaaaaatttaaggaatatgatgaatctttaggtatgggtgggttt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639738 |
ttgttctatacctggcgaacaaatgttgggaaggttaataagttttgaagaaaataaaaaatttaaggaatatgatgaatctttaggtatgggtgggttt |
43639639 |
T |
|
| Q |
601 |
gtgagggatttaaaggaggaatttaggggtttattaaaggaggtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaatgttgaag |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639638 |
gtgagggatttaaaggaggaatttaggggtttattaaaggaggtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaatgttgaag |
43639539 |
T |
|
| Q |
701 |
ggatgccagagtcggtggttgtgccggcgaagttgtcaccggaggctgagaggtgtatgacggatttggcggtggtgaagataatggagatcggagttgg |
800 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639538 |
ggatgccagagtcggtgataatgccggcgaagttgtcaccgggggctgagaggtgtatgacggatttggcggtggtgaagataatggagatcggagttgg |
43639439 |
T |
|
| Q |
801 |
attggtgaagccagaagaggcatgtcggttgtatgatggacttcattctcatttgaaatctgttggtattgatgatgtc |
879 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43639438 |
attggtgaagccagaagaggcatgccggttgtatgatggacttcattctcatttgaaatctgttggtattgatggtgtc |
43639360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 280 - 444
Target Start/End: Original strand, 486412 - 486576
Alignment:
| Q |
280 |
cttctagaagaaaaaacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaag |
379 |
Q |
| |
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||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
486412 |
cttctagaagaaaaaactgtccccggaatagtggataaatttggatggtgtacatgggatgcattttatcttaaggtacaccctcaaggagtttgggaag |
486511 |
T |
|
| Q |
380 |
gtgttaagggtttagtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaa |
444 |
Q |
| |
|
||||||||| |||| || ||||| ||||| || | ||||| | |||||||||||||||||| |
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| T |
486512 |
gtgttaaggatttatctgatggtggttgtccacctggctttgtcttgattgatgatggttggcaa |
486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 646 - 698
Target Start/End: Original strand, 486766 - 486818
Alignment:
| Q |
646 |
tatgtgtggcatgctttttgtgggtattggggtgggattaggcctaatgttga |
698 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
486766 |
tatgtgtggcatgctttatgtggttattggggtgggataagacctaatgttga |
486818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 36432444 - 36432407
Alignment:
| Q |
310 |
gttgataaatttggatggtgtacatgggatgcatttta |
347 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |
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| T |
36432444 |
gttgataaatttggttggtgtacatgggatgcttttta |
36432407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 34698263 - 34698214
Alignment:
| Q |
643 |
gtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaa |
692 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||| |||| ||||| |
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| T |
34698263 |
gtttatgtttggcatgcactttgtgggtattggggtggggttagacctaa |
34698214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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