View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20562_high_11 (Length: 449)
Name: NF20562_high_11
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 54793961 - 54793562
Alignment:
| Q |
18 |
ctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54793961 |
ctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaa |
54793862 |
T |
|
| Q |
118 |
tataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54793861 |
tataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggt |
54793762 |
T |
|
| Q |
218 |
atcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54793761 |
atcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttct |
54793662 |
T |
|
| Q |
318 |
tgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattcttttcgtcccaatattagttttattaatacccgtcagca |
417 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54793661 |
tgagaaacaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattcttttcgtcccaatattagttttattaatacccgtcagca |
54793562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 52286642 - 52286243
Alignment:
| Q |
18 |
ctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
52286642 |
ctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaacttctcatcttcctcattcatgactgactgtgtcaa |
52286543 |
T |
|
| Q |
118 |
tataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgt |
217 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
52286542 |
tataatagtattaccgtgttaattattatactatttctacattgaggcataactactgcaaaaacacagagcatgtctttatggtacataccacatggct |
52286443 |
T |
|
| Q |
218 |
atcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttct |
317 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52286442 |
atcattctctctgacgactttaaaagggtgccaagctgaattcttcacattctcctgccaaaaagagcaaagctccatggccttcatcccagcttcttct |
52286343 |
T |
|
| Q |
318 |
tgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattcttttcgtcccaatattagttttattaatacccgtcagca |
417 |
Q |
| |
|
| |||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
52286342 |
tcagaaagaaatcttttcttgcagacattcacaaaaactttctgatcaaggtctcccattcttttcgtcccaatattagttttattattaccagtcagca |
52286243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 54775678 - 54775932
Alignment:
| Q |
18 |
ctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54775678 |
ctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagctttttcaatttctcatcttcctcatttataactgactgtgtcaa |
54775777 |
T |
|
| Q |
118 |
tataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54775778 |
tataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggt |
54775877 |
T |
|
| Q |
218 |
atcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54775878 |
atcattcactctgaccactttaaaagggtgccatgctgaatttttcacatgctcc |
54775932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 801805 - 801426
Alignment:
| Q |
18 |
ctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaa |
117 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
801805 |
cttttaaggctgttacaacagctgaatatatctcgtctccccattccttcttcagcttttgtagtttctcatcttcctcatctataactgactgtgtcaa |
801706 |
T |
|
| Q |
118 |
tataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgt |
217 |
Q |
| |
|
|| |||| ||||||||||||||||| || ||||||||| ||||| || |||| ||| ||||||||||||||||| ||||| |||||||||| | | | |
|
|
| T |
801705 |
tacaacaatattaccgtgttaattattacactatttctctattgaggcttagccactccaaaaacacagagcatggctttagggtacataccacggggtt |
801606 |
T |
|
| Q |
218 |
atcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttct |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||| | |||||||||||| | |||||| ||||||||||| || |
|
|
| T |
801605 |
atcattctgactgaccactttaaaagggtgccaagctgagttcttcacattttcctgccataaagagcaaagctcaacggcctttatcccagcttcatc- |
801507 |
T |
|
| Q |
318 |
tgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattcttttcgtcccaatattagtttt |
400 |
Q |
| |
|
|||| |||||||||||||||| | | |||||||||||||| |||||||||||||| || || || |||||||||||||| |
|
|
| T |
801506 |
--agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaaggtctcccatcctcttggtgccaatattagtttt |
801426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 54775950 - 54776016
Alignment:
| Q |
348 |
acaaaaaccttctcatcaaggtctcccattcttttcgtcccaatattagttttattaatacccgtca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattcttttcgtcccaatattagttttattaatacccgtca |
54776016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 52283752 - 52283789
Alignment:
| Q |
412 |
tcagcaaacagaaacgccaaacacaaggcaaaccacct |
449 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52283752 |
tcagcaaacagaaacgccaaacaaaaggcaaaccacct |
52283789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 54778051 - 54778014
Alignment:
| Q |
412 |
tcagcaaacagaaacgccaaacacaaggcaaaccacct |
449 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54778051 |
tcagcaaacagaaacgccaaacaaaaggcaaaccacct |
54778014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 54791094 - 54791131
Alignment:
| Q |
412 |
tcagcaaacagaaacgccaaacacaaggcaaaccacct |
449 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54791094 |
tcagcaaacagaaacgccaaacaaaaggcaaaccacct |
54791131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University