View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20562_high_20 (Length: 279)
Name: NF20562_high_20
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 41342488 - 41342753
Alignment:
| Q |
11 |
cacagaccttacttaggatatagttcaatgccacacataccaatgaaacgattttagttttttcatggatagttattacggctaaatctgtaagcagaat |
110 |
Q |
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| T |
41342488 |
cacagaccttacttaggatatagttcaatgccacacataccaatgaaacgtatttagttttttcatggacagatattacggctaaatctgtaagcagaat |
41342587 |
T |
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| Q |
111 |
catccatcatcgtatgcaaactatcaagttctgacacaaatatgaaggacatacaataatcctgacagaaacattgtttctaattgataacattcaacaa |
210 |
Q |
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| T |
41342588 |
catccatcatcgtatgcaaactatcaagttctgacacaaatatgaaggacatac---aatcctgacagaaacattgtttctaattgataacattcaacaa |
41342684 |
T |
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| Q |
211 |
aacaggtacaaatatgaaggacatacaacagtatcatattatcttcacagaaacattgtttctaattga |
279 |
Q |
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| T |
41342685 |
aacaggtacaaatatgaaggacatacaacagtatcgtattatcttcacagaaacattgtttctaattga |
41342753 |
T |
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