View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20562_low_10 (Length: 453)
Name: NF20562_low_10
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 29220753 - 29220320
Alignment:
| Q |
1 |
gatgctaatcgtgacatctnnnnnnntctacttccaactaagtagcaaagccaattttctaaggataatatttgcggatatgtccggacattcgacacag |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29220753 |
gatgctaatcgtgacatctaaaaaaatctacttccaactaagtagcaaagccaattttctaaggataatatttgcggatatgaccggacattcgacacag |
29220654 |
T |
|
| Q |
101 |
ttcatatttatcttgactgtttttctaaggcgtccatttcaatcgtaatgcgagtattgtttgggaaatctttctttaaccttcacatggttggattgtg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29220653 |
ttcatatttatcttaactgtttttctaaggcgtccatttcaatcgtaatgcgactattgtttgggaaatctttctttaaccttcgcatggttggattgtg |
29220554 |
T |
|
| Q |
201 |
gcatattgacaaacctttataccggggccaataatttgagtcgtggaccacttcgaagacgacgtatacaccttcaagtaatgttctcgaatcaccgtca |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29220553 |
gcatattgacaaacctttatactcgggccaataatttgagtcgtggaccacttcaaagacgacgtatacaccttcaagtaatgttctcgaatcaccgtca |
29220454 |
T |
|
| Q |
301 |
tgcaatgtttagtgaatgaatcactagaacctagccttgcttcagccatatgtgctctaagtgaaaacaagggcccaaacctatagtaggttggttggac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29220453 |
tgcaatgtttagtgaatgaatcactagaacctagccttgcttcagccatatgtgctctaagtgaaaacaagggctcaaacctatagtaggttggttggac |
29220354 |
T |
|
| Q |
401 |
caaagttgtgatagggagattgtgagtacccttg |
434 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29220353 |
caaagttgtgatagggagattgtgagtacccttg |
29220320 |
T |
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