View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20562_low_12 (Length: 440)

Name: NF20562_low_12
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20562_low_12
NF20562_low_12
[»] chr4 (3 HSPs)
chr4 (138-263)||(50094341-50094465)
chr4 (344-422)||(50094554-50094632)
chr4 (193-263)||(33607573-33607643)
[»] chr2 (3 HSPs)
chr2 (135-263)||(22053229-22053357)
chr2 (135-255)||(22060305-22060425)
chr2 (138-255)||(7317503-7317620)
[»] scaffold1176 (1 HSPs)
scaffold1176 (135-263)||(2156-2284)
[»] chr5 (1 HSPs)
chr5 (135-255)||(28592190-28592310)
[»] scaffold1118 (1 HSPs)
scaffold1118 (135-263)||(2517-2645)
[»] chr8 (1 HSPs)
chr8 (191-263)||(45448372-45448444)
[»] chr1 (3 HSPs)
chr1 (188-263)||(14095828-14095903)
chr1 (195-263)||(10708075-10708143)
chr1 (191-263)||(46604543-46604615)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 50094341 - 50094465
Alignment:
Q  138 ctcaaatcatatcacttatcatttgtcatgcgacataaacgtgttttactatatcagcgattgtcacgtatgactccgtttaccagctcagcgtttctgt 237  Q
    |||||||||||||| |||||||||||||||||||||||| || |||| | || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50094341 ctcaaatcatatcatttatcatttgtcatgcgacataaatgt-ttttgccatgtcagcgattgtcacgtatgactccgtttaccagctcagcgtttctgt 50094439  T
Q  238 aacaaaagttaacattagagactaaa 263  Q
    ||||||| ||||||||||||||||||    
T  50094440 aacaaaaattaacattagagactaaa 50094465  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 50094554 - 50094632
Alignment:
Q  344 tttaagcatatatatgcttaatacaccaatccttgttactctatattctttgtcttatccatatttggaattgaaatat 422  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50094554 tttaagcatatgtatgtttaatacaccaatccttgttactctatattctttgtcttatccatatttggaattgaaatat 50094632  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 33607643 - 33607573
Alignment:
Q  193 agcgattgtcacgtatgactccgtttaccagctcagcgtttctgtaacaaaagttaacattagagactaaa 263  Q
    |||||||| ||||| ||||||||||| |||||| ||||||| | ||||| | |||||| |||| |||||||    
T  33607643 agcgattgccacgtgtgactccgtttgccagctaagcgtttttctaacagatgttaacgttagggactaaa 33607573  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 22053357 - 22053229
Alignment:
Q  135 tccctcaaatcatatcacttatcatttgtcatgcgacataaacgtgttttactatatcagcgattgtcacgtatgactccgtttaccagctcagcgtttc 234  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||||| | || |||||||||| || || ||||||||||| ||||||||||||||     
T  22053357 tccctcaaatcatatcacttatcatttgtcaggccacataagcgtgtttttccatgtcagcgattgccatgtgtgactccgtttgccagctcagcgtttt 22053258  T
Q  235 tgtaacaaaagttaacattagagactaaa 263  Q
    ||||||| |||||||| |||| |||||||    
T  22053257 tgtaacagaagttaacgttagggactaaa 22053229  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 22060305 - 22060425
Alignment:
Q  135 tccctcaaatcatatcacttatcatttgtcatgcgacataaacgtgttttactatatcagcgattgtcacgtatgactccgtttaccagctcagcgtttc 234  Q
    ||||||||||||||||||||||||| ||||| ||  ||||| | |||||| | || ||| |||||  || || |||||| |||| |||||||| |||||     
T  22060305 tccctcaaatcatatcacttatcatatgtcaggccccataagcatgttttgccatgtcatcgattaccatgtgtgactctgttttccagctcatcgtttt 22060404  T
Q  235 tgtaacaaaagttaacattag 255  Q
    ||||||| |||||||| ||||    
T  22060405 tgtaacataagttaacgttag 22060425  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 7317620 - 7317503
Alignment:
Q  138 ctcaaatcatatcacttatcatttgtcatgcgacataaacgtgttttactatatcagcgattgtcacgtatgactccgtttaccagctcagcgtttctgt 237  Q
    |||||||||||||| ||||||| ||||| || |||||| | ||||||  ||| |||| || || ||||| || |||||||| ||| |  ||||||| |||    
T  7317620 ctcaaatcatatcagttatcatctgtcaggccacataagcatgttttgttatgtcagtgagtgacacgtgtgcctccgtttgccaacaaagcgtttatgt 7317521  T
Q  238 aacaaaagttaacattag 255  Q
    |||| |||||||||||||    
T  7317520 aacagaagttaacattag 7317503  T

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Target: scaffold1176 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 2284 - 2156
Alignment:
Q  135 tccctcaaatcatatcacttatcatttgtcatgcgacataaacgtgttttactatatcagcgattgtcacgtatgactccgtttaccagctcagcgtttc 234  Q
    ||||||||||||||||||||||||||| ||| || |||||| |||||||| | |  ||||  |||| ||||| ||||||||||| |||||||| |||||     
T  2284 tccctcaaatcatatcacttatcatttttcaggccacataagcgtgttttgccacgtcagtaattgccacgtgtgactccgtttgccagctcaacgtttt 2185  T
Q  235 tgtaacaaaagttaacattagagactaaa 263  Q
    ||||||| |||||||| |||| |||||||    
T  2184 tgtaacagaagttaacgttagggactaaa 2156  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 28592310 - 28592190
Alignment:
Q  135 tccctcaaatcatatcacttatcatttgtcatgcgacataaacgtgttttactatatcagcgattgtcacgtatgactccgtttaccagctcagcgtttc 234  Q
    ||||||||||||||||||||||||| ||||| || |||||| |||||||| | || ||||| |||| ||||| | |  || ||| ||||||||||||||     
T  28592310 tccctcaaatcatatcacttatcatctgtcaggccacataagcgtgttttgccatgtcagcaattgccacgtgtaatcccatttgccagctcagcgtttt 28592211  T
Q  235 tgtaacaaaagttaacattag 255  Q
    ||||||| |||||||| ||||    
T  28592210 tgtaacagaagttaacgttag 28592190  T

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Target: scaffold1118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 2645 - 2517
Alignment:
Q  135 tccctcaaatcatatcacttatcatttgtcatgcgacataaacgtgttttactatatcagcgattgtcacgtatgactccgtttaccagctcagcgtttc 234  Q
    ||||||||||||||||| ||||||| ||||| ||  ||||| | |||||| | || ||| |||||| || || |||||| ||||  ||||||| | |||     
T  2645 tccctcaaatcatatcatttatcatatgtcaggccccataagcatgttttgccatgtcatcgattgccatgtgtgactctgtttgtcagctcatcatttt 2546  T
Q  235 tgtaacaaaagttaacattagagactaaa 263  Q
    ||||||| |||||||| |||| |||||||    
T  2545 tgtaacagaagttaacgttagggactaaa 2517  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 45448372 - 45448444
Alignment:
Q  191 tcagcgattgtcacgtatgactccgtttaccagctcagcgtttctgtaacaaaagttaacattagagactaaa 263  Q
    |||||||||||||||| ||||||||||| ||| || ||||||| | ||||| | |||||| ||||||||||||    
T  45448372 tcagcgattgtcacgtgtgactccgtttgccaactaagcgtttttctaacagaggttaacgttagagactaaa 45448444  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 14095903 - 14095828
Alignment:
Q  188 atatcagcgattgtcacgtatgactccgtttaccagctcagcgtttctgtaacaaaagttaacattagagactaaa 263  Q
    ||||||||||||||||||| |||||||||||| | ||   | |||| ||||||||||||||||||||  |||||||    
T  14095903 atatcagcgattgtcacgtgtgactccgtttatctgcaatgtgtttttgtaacaaaagttaacattatggactaaa 14095828  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 10708143 - 10708075
Alignment:
Q  195 cgattgtcacgtatgactccgtttaccagctcagcgtttctgtaacaaaagttaacattagagactaaa 263  Q
    |||||| ||||| ||||||||||| ||| || ||||||| | ||||| | |||||| ||||||||||||    
T  10708143 cgattgccacgtgtgactccgtttgccaactaagcgtttttctaacagaggttaacgttagagactaaa 10708075  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 46604615 - 46604543
Alignment:
Q  191 tcagcgattgtcacgtatgactccgtttaccagctcagcgtttctgtaacaaaagttaacattagagactaaa 263  Q
    |||||||||| ||||| ||||||||||| ||| || ||||||| | ||||| | |||||| |||| |||||||    
T  46604615 tcagcgattgccacgtgtgactccgtttgccaactaagcgtttttctaacagaggttaacgttagggactaaa 46604543  T

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