View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20562_low_14 (Length: 372)
Name: NF20562_low_14
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_14 |
 | |
|
| [»] chr2 (10 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 38022308 - 38021954
Alignment:
| Q |
18 |
catataataataaatcctatatatacacaaatttctatccatgcaaaaattgaatcacttccaagaccacttcaagttccaaagcaataaagaggatgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38022308 |
catataatagtaaatcctatatatacacaaatttctatccatgcaaaaattgaatcacttccaagaccacttcaagttccaaagcaataaagaggatgat |
38022209 |
T |
|
| Q |
118 |
tcattcacttgtttcaaactcaattaatcttgaccaaaaactcttgtgtttgattggatcttcctttgcataatccaaaatgtttctttctttagttggg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38022208 |
tcattcacttgtttcaaactcaattaatcttgatcaaaaactcttgtgtttgattggatcttcctttgcataattcaaaatgtttctttctttagttggg |
38022109 |
T |
|
| Q |
218 |
accccagcaactcaagaacatgacagttctcaaagattcctctgactgcttggatttctcgtccctcaattttgtggaaggaattttgttgttggcatga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38022108 |
accccagcaactcaagaacatgacagttctcaaagattcctctgactgcttggatttctcgtccctcaattttgtggaaggaattttgttgttggcatga |
38022009 |
T |
|
| Q |
318 |
gacaaagacctcatgttatgtttagaatgctgttgtgctgatcttataacactgt |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38022008 |
gacaaagacctcatgttatgtttagaatgctgttgtgctgatcttataacactgt |
38021954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 38034208 - 38033850
Alignment:
| Q |
18 |
catataataataaatcctatatatacac-aaatttctatccatgcaaaaattgaatcacttccaagaccacttcaagttccaaagcaataaagaggatga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||| | ||||||| || ||| |||||| |
|
|
| T |
38034208 |
catataaaaataaatcctatatatacacgaaaaatataaccatgcaaaaattgaatcacttccaagaccacttcatgatccaaagaaacaaaagggatga |
38034109 |
T |
|
| Q |
117 |
ttcattcacttgtttcaaactcaattaatcttgaccaaaaactcttgtgtttgattggatcttcctttgc----ataatccaaaatgtttctttctttag |
212 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||| ||||||| ||||| ||||| ||||||||| | || ||||| ||| |||| | ||||||| |
|
|
| T |
38034108 |
ttctttcacttgttttagactcaattaatcttgataaaaaacttttgtgcttgataggatcttccctagctagcataattgaaa-tgttaatatctttag |
38034010 |
T |
|
| Q |
213 |
ttgggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgcttggatttctcgtccctcaattttgtggaaggaattttgttgttgg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| || |||| || ||||||||||| |
|
|
| T |
38034009 |
ttgggaccccagcaactcaagaacatgaccgttctcaaagattcctccgactgtttggatttgtcatccctcaatttggttgaagaaactttgttgttgg |
38033910 |
T |
|
| Q |
313 |
catgagacaaagacctcatgttatgtttagaatgctgttgtgctgatcttataacactgt |
372 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
38033909 |
catgagacaaagacctgatattatgtttagcatgttgttgtgctgatcttataacactgt |
38033850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 38046648 - 38046592
Alignment:
| Q |
212 |
gttgggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgctt |
268 |
Q |
| |
|
|||||||||||| || || ||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
38046648 |
gttgggaccccaacagcttaagtacatgactgttctcaaagattcctctgattgctt |
38046592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 38028499 - 38028444
Alignment:
| Q |
213 |
ttgggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgctt |
268 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | ||||||||||||||||| ||||| |
|
|
| T |
38028499 |
ttgggaccccaacaactcaagtacatgactttcctcaaagattcctctgattgctt |
38028444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 38043139 - 38043084
Alignment:
| Q |
213 |
ttgggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgctt |
268 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | ||||||||||||||||| ||||| |
|
|
| T |
38043139 |
ttgggaccccaacaactcaagtacatgactttcctcaaagattcctctgattgctt |
38043084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 38045141 - 38045086
Alignment:
| Q |
213 |
ttgggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgctt |
268 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||||||||||||| || ||||| |
|
|
| T |
38045141 |
ttgggaccccagcaactcaagtacatgaccttcctcaaagattcctccgattgctt |
38045086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 38067486 - 38067431
Alignment:
| Q |
213 |
ttgggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgctt |
268 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | ||||||||||||||||| ||||| |
|
|
| T |
38067486 |
ttgggaccccaacaactcaagtacatgactttcctcaaagattcctctgattgctt |
38067431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 37987426 - 37987372
Alignment:
| Q |
207 |
ctttagttgggaccccagcaactcaagaacatgacagttctcaaagattcctctg |
261 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||||||| | |||||| |||| |
|
|
| T |
37987426 |
ctttagttaggaccccagcaactcaagtacatcacagttctaagagattcttctg |
37987372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 38031926 - 38031872
Alignment:
| Q |
216 |
ggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgcttgg |
270 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||||| ||||||| ||| |||| |
|
|
| T |
38031926 |
ggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttgg |
38031872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 38003678 - 38003630
Alignment:
| Q |
213 |
ttgggaccccagcaactcaagaacatgacagttctcaaagattcctctg |
261 |
Q |
| |
|
||||||||||| || |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
38003678 |
ttgggaccccaacagctcaagtacatgacagtcctcaaagactcctctg |
38003630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University