View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20562_low_19 (Length: 280)
Name: NF20562_low_19
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 43004075 - 43004324
Alignment:
| Q |
20 |
taattaaagttcaacataaacaaaattttccatgattaaattcaaatatttaagagattttcaagaatcattctaaacacacaaatcaagaacaaagaaa |
119 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43004075 |
taattaaagttcaacatgaacaaagttttccatgattaaattcaaatatttaagagattttcaagaatcattctaaacacacaaatcaagaacaaagaaa |
43004174 |
T |
|
| Q |
120 |
taaattgaaactttcaaagctggttagaatagaag------atgaatatgaatataaagaagcattttcaccatgtcttatgtctatgaggaaaataaga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43004175 |
taaattgaaactttcaaagctggttagaatagaagatgaatatgaatatgaatataaagaagcattttcaccatgtcttatgtctaagaggaaaataaga |
43004274 |
T |
|
| Q |
214 |
tnnnnnnngtgactgaatcaagagatttggaaaacctttatcttgatacg |
263 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43004275 |
taaaaaaagtgactgaatcaagagatttggaaaacctttatcttgatacg |
43004324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University