View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20562_low_2 (Length: 694)
Name: NF20562_low_2
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 235 - 475
Target Start/End: Original strand, 38021103 - 38021355
Alignment:
| Q |
235 |
cacataggtccgtgtaccaaatttcagctgcaccaaattatacctcatcacctgctgcttttttacaacaaacaatggttttaggcattttgct--caca |
332 |
Q |
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| T |
38021103 |
cacataggtccgtgtaccaaatttcagctgcaccaaattatacctcatcacctgctgggtttttacaacaaacaatggttttaggcactttgctcacaca |
38021202 |
T |
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| Q |
333 |
ttccaaacagtggttccgtacagtcctaaacgattctataactacaacattataattttgtcacttac----------atgagcacctagtgcaatttgc |
422 |
Q |
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| T |
38021203 |
ttccaaaccgtggttccgtacagtcctaaacgattctataactacaacattataattttgtcacttacatgagcaacaatgagcacctagtgcaatttgc |
38021302 |
T |
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| Q |
423 |
atggtcctacaattacaaatcaagtctaaatgtagggattgatatattttatt |
475 |
Q |
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| T |
38021303 |
atggtcctacaattacaaatcaagtctaaatgtagggattgatatattttatt |
38021355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 467 - 694
Target Start/End: Original strand, 38021539 - 38021769
Alignment:
| Q |
467 |
tattttattagatataccctatctatttcaatttagctaa----cgacaaaaataacc-acaaaacaaaaaccatgttccccnnnnnnnattt-cccacc |
560 |
Q |
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| T |
38021539 |
tattttattagata--ccctatctatttcaattcagctaattaacgacaaaaataacccacaaaacaaaaaccatgttcccctttttttattttcccacc |
38021636 |
T |
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| Q |
561 |
cacacgcactccacacagcatctggttttcctcccaaactaaattattgtcactttttctatcccaacactatatat--taacactactaccttagccta |
658 |
Q |
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| T |
38021637 |
cacacgcactccacacagcatctggttttcctcccaaactaaattattgtcactttttctatcccaacactatatatattaacactacaaccttagccta |
38021736 |
T |
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| Q |
659 |
ttttctacatcactactactactacctcatcaacca |
694 |
Q |
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| T |
38021737 |
ttttctacatcacta---ctactacctcatcaacca |
38021769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 38019039 - 38019155
Alignment:
| Q |
34 |
ctatatataacaatttccttcactcttctagctcaaccaaaacacaagataccacttcaagtaagaaattttctttgtcatctaaaaagctacaaaatca |
133 |
Q |
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| T |
38019039 |
ctatatataataatttccttcactcttctagctcaaccaaaacacatgataccacttcaagtaagcaattttctttgtcatctaaaaagctacaaaatca |
38019138 |
T |
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| Q |
134 |
cttgaattagacaagat |
150 |
Q |
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| T |
38019139 |
cttgaattagacaagat |
38019155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 266 - 356
Target Start/End: Original strand, 38030395 - 38030487
Alignment:
| Q |
266 |
accaaattatacctcatcacctgctgcttttttacaacaaacaatggttttaggcattttgctcaca--ttccaaacagtggttccgtacagt |
356 |
Q |
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| T |
38030395 |
accaaattatacctcatcacctgctggtttttaacaacaaacaatggtttcaggcattttactcacacgttccaaaccatggttccgtacagt |
38030487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 38021010 - 38021068
Alignment:
| Q |
166 |
cgatgcgggactcttaacacaattattatttcttcaaaaattatttatatataattatc |
224 |
Q |
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| T |
38021010 |
cgatgtgggactcttaacacaattattatttcttcaaaaattatttatatatatttatc |
38021068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 38030494 - 38030556
Alignment:
| Q |
413 |
tgcaatttgcatggtcctacaattacaaatcaagtctaaatgtagggattgatatattttatt |
475 |
Q |
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| T |
38030494 |
tgcaatttgcatggtcctacaattacaaatcaaatccaaatgcagggattaatatattttatt |
38030556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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