View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20562_low_21 (Length: 265)
Name: NF20562_low_21
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_21 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 50093859 - 50094108
Alignment:
| Q |
16 |
cttagaaaaatcacagagattatgtctcattccaattcctttattttattttagataaacaggttgatcgtagcaagagaaggcatacatgaagttaaat |
115 |
Q |
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| T |
50093859 |
cttacaaaaatcacaggtattatgtctcattccaatccctttattttattttagataaacagattgatcgtagcaagagaagacatacatgaagttaaat |
50093958 |
T |
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| Q |
116 |
gttttaccatcatatacacgtattgtaccagttttaaataattccttatgtattttttcaactagcttatgcatttagagcaaatcaaaatagtttaaga |
215 |
Q |
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| T |
50093959 |
attttaccatcttatacacgtattgtaccagttttagataattccttatgtattttttcaactagcttatgcacttagagcaaatcaaaatagtttaaga |
50094058 |
T |
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| Q |
216 |
attttttctcagtcaagatttgaataaaatagatgaggcttataacttat |
265 |
Q |
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| T |
50094059 |
aatttttctcagtcaagttctgaataaaatagatgaggcttataacttat |
50094108 |
T |
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Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 9696980 - 9697074
Alignment:
| Q |
171 |
tttcaactagcttatgcatttagagcaaatcaaaatagtttaagaattttttctcagtcaagatttgaataaaatagatgaggcttataacttat |
265 |
Q |
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| T |
9696980 |
tttcaactagcttatgcagttagagcaaatcaaaatagtttaagaaatttttctcggtcaagttctgaatcaaatagacgaggcttataacttat |
9697074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 33125450 - 33125505
Alignment:
| Q |
37 |
atgtctcattccaattcctttattttattttagataaacaggttgatcgtagcaag |
92 |
Q |
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| T |
33125450 |
atgtctcaccccaatccctttattttattttagataagcaggttgatcgtggcaag |
33125505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 17863213 - 17863123
Alignment:
| Q |
80 |
tgatcgtagcaagagaaggcatacatgaagttaaatgttttaccatcatatacacgtattgtaccagttttaaataattccttatgtattt |
170 |
Q |
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| T |
17863213 |
tgatcgttgtaagaaaaggcagacatgaagctgaatgatttaccatcatatacatgttttgtaccagccatagataaattcttatgtattt |
17863123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 33119220 - 33119274
Alignment:
| Q |
37 |
atgtctcattccaattcctttattttattttagataaacaggttgatcgtagcaa |
91 |
Q |
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| T |
33119220 |
atgtctcaccccaatccctttatttcattttagataagcaggttgatcgtggcaa |
33119274 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 10677713 - 10677656
Alignment:
| Q |
113 |
aatgttttaccatcatatacacgtattgtaccagttttaaataattccttatgtattt |
170 |
Q |
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| T |
10677713 |
aatgatttaccttcatctacacgtcttgtaccagttttagataacttcttatgtattt |
10677656 |
T |
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