View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20562_low_23 (Length: 238)
Name: NF20562_low_23
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 41117597 - 41117823
Alignment:
| Q |
17 |
aactaatggacatggagggattgaaaattttaaaagtaaatatcacaccttctcatagacctacacaaca-----aaacaaaaggtatctttatgaacag |
111 |
Q |
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| T |
41117597 |
aactaatggacatggagggattgaaaattttagaagtaaatatcacaccttctcatagacctacaaaacaaaacaaaacaaaaggtatcattatgaacag |
41117696 |
T |
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| Q |
112 |
gtccacatcttggtcagagaaactgaaccaagctagcaaaatctgcaacaaaaaccgcaaagataccgtaactgtattttaacattgatgacatggccgc |
211 |
Q |
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| T |
41117697 |
gtccacatcttggtcagagaaactgaaccaagctagcaaaatctgcaacaaaaaccgcaaagataccataactgtattttaacattgatgacatggccgc |
41117796 |
T |
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| Q |
212 |
atcaggaattaaccatgaaaggttgtc |
238 |
Q |
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| T |
41117797 |
atcaggaataaaccatgaaaggttgtc |
41117823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 41105383 - 41105606
Alignment:
| Q |
17 |
aactaatggacatggagggattgaaaattttaaaagtaaatatcacaccttctcatagacctacacaacaaaacaa-aaggtatctttatgaacaggtcc |
115 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || || |||| ||| ||||||||| |
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| T |
41105383 |
aactaatggacattgagggattgaaaattttagaagtaaatatcacaccttctcatagacctacaaaacaaaaaaagaatatatcattaggaacaggtct |
41105482 |
T |
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| Q |
116 |
acatcttggtcagagaaactgaaccaagctag-caaaatctgcaacaaaaaccgcaaagataccgtaactgtattttaacattgatgacatggccgcatc |
214 |
Q |
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| T |
41105483 |
atatcttcttgagagaaactgaaccaaacaggtcaaaatctgcaacaaaacccgcaaacataccgtaactgtattttgacattgatgacagggccacatc |
41105582 |
T |
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| Q |
215 |
aggaattaaccatgaaaggttgtc |
238 |
Q |
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| T |
41105583 |
agaaatgaaccatggaaggttgtc |
41105606 |
T |
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