View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20562_low_27 (Length: 219)
Name: NF20562_low_27
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 41342811 - 41342991
Alignment:
| Q |
18 |
atagacgcaaaaatccaaaaagagattaaaacaggtacattgcttctaattgacggtattaggttcaacattcccgaacggctcattcaagtccagaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342811 |
atagacgcaaaaatccaaaaagagattaaaacaggtacattgcttctaattgacggtattaggttcaacattcccgaacggctcattcaagtccagaaaa |
41342910 |
T |
|
| Q |
118 |
agtcttttgcttaatcttatagctccagggaacatcaaaaggttatatgaaaccatatctttcttcaacttcttgtcgttg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342911 |
agtcttttgcttaatcttatagctccagggaacatcaaaaggttatatgaaaccatatctttcttcaacttcttgtcgttg |
41342991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University