View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20562_low_3 (Length: 653)

Name: NF20562_low_3
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20562_low_3
NF20562_low_3
[»] chr5 (9 HSPs)
chr5 (28-364)||(9617183-9617532)
chr5 (482-641)||(9617526-9617684)
chr5 (174-288)||(17391577-17391691)
chr5 (180-288)||(17382807-17382914)
chr5 (169-285)||(1348782-1348898)
chr5 (191-286)||(19970551-19970646)
chr5 (191-277)||(20110862-20110948)
chr5 (198-288)||(17376447-17376537)
chr5 (169-243)||(20049074-20049148)
[»] chr3 (1 HSPs)
chr3 (205-284)||(32243151-32243230)
[»] chr6 (3 HSPs)
chr6 (194-284)||(16229247-16229337)
chr6 (206-284)||(16259556-16259634)
chr6 (203-288)||(31114506-31114591)
[»] scaffold0009 (2 HSPs)
scaffold0009 (204-252)||(21471-21519)
scaffold0009 (202-265)||(39743-39806)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 28 - 364
Target Start/End: Original strand, 9617183 - 9617532
Alignment:
Q  28 aattttcatctccacttcaaccaaaccttcttattcgatttcctcttcaattttatttcttctccacaacaacttcctctagtcaat-agatatggaaaa 126  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |||| | | | |||||||||||| ||||| | | ||||||||    
T  9617183 aattttcctctacacttcaaccaaaccttcttattcgatttcctcttcaattttctt-cttcacaagatcaacttcctctaatcaattatagatggaaaa 9617281  T
Q  127 cattcttcaccaacca---------------aaaaggccacggctgtcattgtcgacgacgatcaatgacttacccaatgatatagtaactcacattctc 211  Q
    ||||||||||||||||               |||||||||||||||||||||||||| || || ||  | |||||  || ||||||||||||||||||||    
T  9617282 cattcttcaccaaccactgcctcctgccacaaaaaggccacggctgtcattgtcgaccacaattaacaatttacctgataatatagtaactcacattctc 9617381  T
Q  212 tcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactctcagttctcgacttccaagatgccg 311  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||   |  ||    
T  9617382 tcttttctcccactcaaatacgctttcagaactatcgttctctcgaaaaggtgggtcccattatcccactcactctaagttctcgacttccacagtaacg 9617481  T
Q  312 atgtggagaacgcagacgacttctaccgattaatcaacgcagtcatgatctcc 364  Q
    |||| |||||  || | |||||||| |||||||||||||||||||||||||||    
T  9617482 atgtcgagaa--cacatgacttctatcgattaatcaacgcagtcatgatctcc 9617532  T

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Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 482 - 641
Target Start/End: Original strand, 9617526 - 9617684
Alignment:
Q  482 gatctccgtctaacgttagtattaggcttcccccctttgccgcctaccattttctcctcctgcgaaacacttgtgattctccatttgtggagtttacgtg 581  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9617526 gatctccgtctagcgttagtattaggcttctcccctttgccgcctaccattttctcctcctgcgaaacacttgtgattctccattt-tggagtttacgtg 9617624  T
Q  582 tagccactatgactcattgctctgttcatcttcctttacttaagaccctggatctgatga 641  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  9617625 tagccactatgactcattgttctgttcatcttcctttacttaagaccctggatatgatga 9617684  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 17391577 - 17391691
Alignment:
Q  174 tcaatgacttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccatt 273  Q
    |||||||||| ||  |||| ||| ||||||||||||||||||| || |||  |||| ||||||| ||||| |||||||| |||||||| |||||| ||||    
T  17391577 tcaatgacttccctgatgagatactaactcacattctctctttgcttccatgcaaagacgcttttagaaccaccgttctttcgaaaagatgggtctcatt 17391676  T
Q  274 atgccactcactctc 288  Q
    |||||||||||||||    
T  17391677 atgccactcactctc 17391691  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 17382807 - 17382914
Alignment:
Q  180 acttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgcca 279  Q
    |||| ||| |||||||| |||||||||||||||||||||| |||  |||| ||||||| ||||| |  ||||| |||||||| |||||| ||||||||||    
T  17382807 acttccccgatgatatactaactcacattctctcttttcttccatgcaaacacgcttttagaacca-tgttctttcgaaaagatgggtctcattatgcca 17382905  T
Q  280 ctcactctc 288  Q
    |||||||||    
T  17382906 ctcactctc 17382914  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 1348898 - 1348782
Alignment:
Q  169 gacgatcaatgacttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtc 268  Q
    |||| |||| ||||||||  | || ||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||| || || || ||| ||    
T  1348898 gacggtcaacgacttaccagacgagatactaactcacattatctcttttctcacattcaaagacgctttcagaactaccattctttctaagagatggttc 1348799  T
Q  269 ccattatgccactcact 285  Q
    ||||||| |||| ||||    
T  1348798 ccattattccacacact 1348782  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 19970646 - 19970551
Alignment:
Q  191 gatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactc 286  Q
    |||||| |||||||||||||||||||||| ||| ||| | ||||||||||||| ||||| || || || | ||||||| |||| ||| ||||||||    
T  19970646 gatatactaactcacattctctcttttcttccaatcagagacgctttcagaaccaccgtgctttccaagacgtgggtctcattgtgctactcactc 19970551  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 20110862 - 20110948
Alignment:
Q  191 gatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgc 277  Q
    |||||| ||||||||||  |||||||||| ||| ||||| ||||||||| ||| ||||||||||| || |  |||||| ||||||||    
T  20110862 gatatactaactcacatcgtctcttttcttccattcaaagacgctttcaaaaccaccgttctctcaaagaaatgggtctcattatgc 20110948  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 17376447 - 17376537
Alignment:
Q  198 taactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactctc 288  Q
    ||||||| ||||||||||| || |||   ||| ||||||| |||  ||| ||||| |||||||| ||| || |||||||||||||||||||    
T  17376447 taactcatattctctctttacttccatgtaaagacgcttttagatttacagttctttcgaaaagatggatctcattatgccactcactctc 17376537  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 20049074 - 20049148
Alignment:
Q  169 gacgatcaatgacttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaac 243  Q
    |||||| |||||||| | | | || ||| ||| |||||||||||||||||||||  ||||||||| |||||||||    
T  20049074 gacgattaatgacttcctcgacgaaatactaattcacattctctcttttctccctatcaaatacgttttcagaac 20049148  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 32243230 - 32243151
Alignment:
Q  205 cattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcac 284  Q
    |||||||| |||||| ||| ||||| ||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||    
T  32243230 cattctcttttttcttccagtcaaagacgctttcagaactaccattctttcgaagaggtgggtcccattacgccactcac 32243151  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 16229337 - 16229247
Alignment:
Q  194 atagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcac 284  Q
    ||||||| ||| |||||||||||||| ||| ||||| | ||||||||||||||| |||| ||||| ||||||||| ||||||| |||||||    
T  16229337 atagtaagtcaaattctctcttttcttccaatcaaagaggctttcagaactaccattctttcgaagaggtgggtctcattatgtcactcac 16229247  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 16259634 - 16259556
Alignment:
Q  206 attctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcac 284  Q
    |||||||||||||| ||| ||||| ||||||||||||||||| |||| ||||| ||||||||| ||||||| |||||||    
T  16259634 attctctcttttcttccaatcaaagacgctttcagaactaccattctttcgaagaggtgggtctcattatgtcactcac 16259556  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 31114506 - 31114591
Alignment:
Q  203 cacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactctc 288  Q
    |||||||| |||||||||||| ||||||| ||||| ||||| |  || || || || || ||||||||||||||||||||||||||    
T  31114506 cacattctgtcttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtcccattatgccactcactctc 31114591  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 21471 - 21519
Alignment:
Q  204 acattctctcttttctcccactcaaatacgctttcagaactaccgttct 252  Q
    |||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  21471 acattctctcttttcttccgatcaaatatgctttcagaactaccgttct 21519  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 39743 - 39806
Alignment:
Q  202 tcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgg 265  Q
    |||||| ||||||||||| ||  ||||||||||||||||||||||| |||| || || ||||||    
T  39743 tcacatactctcttttcttccgatcaaatacgctttcagaactaccattctttccaagaggtgg 39806  T

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