View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20562_low_5 (Length: 574)
Name: NF20562_low_5
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20562_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 51372420 - 51372978
Alignment:
| Q |
1 |
atcacttcccaagttccgtcttcattttcaaccactcttctaacttcaaaactcttgttcattctcagcacgaaaatcacgacagcaccaacgaaaacaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
51372420 |
atcacttcccaagttccatcttcattttcaaccactcttctaacttcaaaactcttgttcattctcagcacgaaaatcacgacagtaccaaccaaaacaa |
51372519 |
T |
|
| Q |
101 |
ccaacgctgttagtacaaaacaaattaaaacaaacaaccttgttgagttcatctgattgtaacttttgcatggtggcaaaccgttagaaacatcaccgtc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51372520 |
ccaacgctgttaatacaaaacaaattaaaacaaacaaccttgttgagttcatctgattgtaacttttgcatggtggcaaaccgttagaaacatcaccgtc |
51372619 |
T |
|
| Q |
201 |
accgtcacagagtttgttaccggtaactaaacttgcattgattgcagagaaagcttcagtagaaggtaaaacgccatgaaaatggttatatgagatgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51372620 |
accgtcacagagtttgttaccggtaactaaacttgcattgattgcagagaaagcttcagtagaaggtaaaacgccatgaaaatggttatatgagatgtta |
51372719 |
T |
|
| Q |
301 |
acttcaacaagcgattcaacgcttcctaaattctttggaatttcaccggaaaattgattctctgatatgtcaagtagaccaagaaccggcattttggcga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51372720 |
acttcaacaagcgattcaacgcttcctaaattctttggaatttcaccggaaaattgattctctgatatgtcaagtagaccaagaaccggcattttggcga |
51372819 |
T |
|
| Q |
401 |
gtttctcaggaatctcgccgtttaaccgattatggcttaagtctaatgaaacaagtttgttgcattgaaaaagttcttctgggaatttaccaaagaggtt |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51372820 |
gtttttcaggaatctcgccgtttaaccgattatggcttaaatctaatgaaacaagtttgttgcattgaaaaagttcttctgggaatttaccgaagaggtt |
51372919 |
T |
|
| Q |
501 |
gttgttgttgagtttcaattgaacaagctctggtaaatttttgaaaccaatttgaatgt |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51372920 |
gttgttgttgagtttcaattgaacaagctctggtaaatttttgaaaccaatttgaatgt |
51372978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 265 - 559
Target Start/End: Original strand, 9482928 - 9483229
Alignment:
| Q |
265 |
ggtaaaacgccatgaaaatggttatatgagatgttaacttcaacaagcgattcaacgcttcctaaattctttggaatttcaccggaaaattgattctctg |
364 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| |
|
|
| T |
9482928 |
ggtaaaacaccatgaaaatggttatgtgagatgttaacttcaacaagcgattcaacgcttcctaaattctttgcaaattcatcggaaaattgattctctg |
9483027 |
T |
|
| Q |
365 |
atatgtcaagtagaccaagaaccggcattttggcgagtttc-------tcaggaatctcgccgtttaaccgattatggcttaagtctaatgaaacaagtt |
457 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||| || |||||||||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
9483028 |
atatgtcaaatagaccaagaaccgacatttcggcgagttttgcggaaatctggaatctcgccgaataattgattatggcttaaatctaatgaaacaagtt |
9483127 |
T |
|
| Q |
458 |
tgttgcattgaaaaagttcttctgggaatttaccaaagaggttgttgttgttgagtttcaattgaacaagctctggtaaatttttgaaaccaatttgaat |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9483128 |
tgttgcattgaaaaagttcttctgggaatttaccaaaaaggttgttgttgttgagttttaattgaacaagctctggtaaatttctgaaaccaatttgaat |
9483227 |
T |
|
| Q |
558 |
gt |
559 |
Q |
| |
|
|| |
|
|
| T |
9483228 |
gt |
9483229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 265 - 559
Target Start/End: Complemental strand, 46295445 - 46295144
Alignment:
| Q |
265 |
ggtaaaacgccatgaaaatggttatatgagatgttaacttcaacaagcgattcaacgcttcctaaattctttggaatttcaccggaaaattgattctctg |
364 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
46295445 |
ggtaacacgccatgaaaatggttatgtgagatgttaatttcaacaagcgattcaatgcttcctaaattctttgcaaattcaccggaaaattgattctctg |
46295346 |
T |
|
| Q |
365 |
atatgtcaagtagaccaagaaccggcattttggcgagtttc-------tcaggaatctcgccgtttaaccgattatggcttaagtctaatgaaacaagtt |
457 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||||||| || |||||||||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
46295345 |
atatgtcaagtagacctagaaccgacatttcaacgagttttgcgggaatctggaatctcgccgaataattgattatggcttaaatctaatgaaacaagtt |
46295246 |
T |
|
| Q |
458 |
tgttgcattgaaaaagttcttctgggaatttaccaaagaggttgttgttgttgagtttcaattgaacaagctctggtaaatttttgaaaccaatttgaat |
557 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
46295245 |
tgtagcattgaaaaagttcttctgggaatttaccaaagaggttgttgttgttgagttttaattgaacaagctctagtaaatttctgaaaccaatttgaat |
46295146 |
T |
|
| Q |
558 |
gt |
559 |
Q |
| |
|
|| |
|
|
| T |
46295145 |
gt |
46295144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University