View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20562_low_9 (Length: 464)

Name: NF20562_low_9
Description: NF20562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20562_low_9
NF20562_low_9
[»] chr3 (5 HSPs)
chr3 (4-220)||(37853080-37853296)
chr3 (284-413)||(37853357-37853486)
chr3 (66-115)||(33075263-33075311)
chr3 (29-113)||(39840659-39840742)
chr3 (43-115)||(40472955-40473025)
[»] chr4 (1 HSPs)
chr4 (61-116)||(40942668-40942722)
[»] chr1 (2 HSPs)
chr1 (37-115)||(10595379-10595456)
chr1 (66-115)||(6219662-6219710)
[»] scaffold0022 (1 HSPs)
scaffold0022 (28-114)||(62688-62773)
[»] chr7 (2 HSPs)
chr7 (29-95)||(22794635-22794701)
chr7 (29-115)||(42709917-42710002)
[»] chr5 (2 HSPs)
chr5 (29-95)||(31066095-31066161)
chr5 (43-120)||(8285227-8285303)
[»] chr8 (2 HSPs)
chr8 (34-115)||(10028656-10028736)
chr8 (71-115)||(32029549-32029593)
[»] scaffold0198 (2 HSPs)
scaffold0198 (71-115)||(11480-11523)
scaffold0198 (71-115)||(11845-11888)
[»] chr6 (1 HSPs)
chr6 (59-115)||(5656572-5656627)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 37853080 - 37853296
Alignment:
Q  4 atgagtaaaccactacatcaggcaatgtcattgtaagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaa 103  Q
    ||||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37853080 atgagtaaaccactaaatcagacattgtcattgtaagttattctcaaattaatcaccgactatatttatattttaaattagtctttgtcttttgttaaaa 37853179  T
Q  104 atttctcaattacgtcattcttcgttgtataacaaaattacaaagacaaagatttaattgagaaactagttatataaatacagctaatttaaaatattaa 203  Q
    |||||||||||| |||||||||| | |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  37853180 atttctcaattatgtcattcttcctcgtataacaaaattataaagacaaagacttaattgaaaaactagttatataaatacagctaatttaaaatattaa 37853279  T
Q  204 tcgagccagtcaatttt 220  Q
    |||||||||||||||||    
T  37853280 tcgagccagtcaatttt 37853296  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 37853357 - 37853486
Alignment:
Q  284 gtttgaaagtgtggaaaatcgggggaacactacatacacaattcacatttgaaatttggaaccattttattccgttgattcataatggcagaagcaagtg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853357 gtttgaaagtgtggaaaatcgggggaacactacatacacaattcacatttgaaatttggaaccattttattccgttgattcataatggcagaagcaagtg 37853456  T
Q  384 aactccgcaggtactttcttccttccacct 413  Q
    ||||||||||||||||||||||||||||||    
T  37853457 aactccgcaggtactttcttccttccacct 37853486  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 33075311 - 33075263
Alignment:
Q  66 tatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||| |||||||||||||||| |||| ||||||||||||||| |||||||    
T  33075311 tattaatattttaaattagtcattgt-ttttgtcaaaaatttatcaatta 33075263  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 39840659 - 39840742
Alignment:
Q  29 tgtcattgtaagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaat 113  Q
    |||| |||||||| ||||| |||||| || | |||| |||| |||||| ||| ||||| |||| ||||||||||| |||||||||    
T  39840659 tgtctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgt-ttttgtcaaaagtttctcaat 39840742  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 40473025 - 40472955
Alignment:
Q  43 attcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||||||||||| || |||| | |||| ||||||||||||||| ||| | ||||||||||| |||||||||||    
T  40473025 attcttaaattagtc-ccgagtctattaatattttaaattagtatttat-ttttgtcaaaagtttctcaatta 40472955  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 40942722 - 40942668
Alignment:
Q  61 gactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaattac 116  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  40942722 gactatattaatattttaaattagtctttgt-ttttgtcaaaagtttctcaattac 40942668  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 10595379 - 10595456
Alignment:
Q  37 taagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    ||||| ||| ||||||||||| |||||| |||| |||||| ||| |||||||||| | ||||||||| |||||||||||    
T  10595379 taagtcatttttaaattaatctccgactttattaatatttcaaactagtctttgt-tattgtcaaaagtttctcaatta 10595456  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 6219662 - 6219710
Alignment:
Q  66 tatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||| ||||||||||||||||  ||||||| |||||||||||||||||||    
T  6219662 tattaatattttaaattagtcactgtcttt-gtcaaaaatttctcaatta 6219710  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 62688 - 62773
Alignment:
Q  28 atgtcattgtaagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatt 114  Q
    ||||| |||||||  ||||| |||||| ||| ||||| |||| |||||||||||||||  || || |||||||||| ||||||||||    
T  62688 atgtctttgtaagagattctcaaattagtcaacgactctattgatattttaaattagttcttatc-tttgtcaaaagtttctcaatt 62773  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 22794635 - 22794701
Alignment:
Q  29 tgtcattgtaagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttt 95  Q
    |||| |||||||| ||| | |||||| ||| ||||| |||| |||||||||| ||||||||||||||    
T  22794635 tgtctttgtaagtcattttcaaattagtcatcgactctattgatattttaaactagtctttgtcttt 22794701  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 42709917 - 42710002
Alignment:
Q  29 tgtcattgtaagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||| |||||||| ||||| |||| | || |||||| |||| |||||||||| |||||  ||||||| ||||||| |||||||||||    
T  42709917 tgtctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtcaatgtcttt-gtcaaaagtttctcaatta 42710002  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 31066161 - 31066095
Alignment:
Q  29 tgtcattgtaagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttt 95  Q
    |||| |||||||| ||||||||||||  | |||||| |||| |||||||||| |||||| |||||||    
T  31066161 tgtctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtctctgtcttt 31066095  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 8285303 - 8285227
Alignment:
Q  43 attcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaattacgtca 120  Q
    ||||| |||||| || | ||||||||| |||||||||| |||||| | ||||| ||||||| ||||||||||| ||||    
T  8285303 attctcaaattagtccctgactatattaatattttaaaatagtctatatcttt-gtcaaaagtttctcaattaagtca 8285227  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 10028656 - 10028736
Alignment:
Q  34 ttgtaagttattcttaaattaatcaccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||||||| ||||| |||||| |||| |||| |||| |||||| |||||||||||| ||  ||| ||||| |||||||||||    
T  10028656 ttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctttatc-cttgccaaaagtttctcaatta 10028736  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 32029549 - 32029593
Alignment:
Q  71 atattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||||| ||| |||||| ||||||||||||||| |||||||||||    
T  32029549 atatttcaaaatagtctatgtcttttgtcaaaagtttctcaatta 32029593  T

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Target: scaffold0198 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 11480 - 11523
Alignment:
Q  71 atattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||    
T  11480 atattttaaaatagtctttgtgttt-gtcaaaaatttctcaatta 11523  T

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Target: scaffold0198; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 11845 - 11888
Alignment:
Q  71 atattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||    
T  11845 atattttaaaatagtctttgtgttt-gtcaaaaatttctcaatta 11888  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 5656627 - 5656572
Alignment:
Q  59 ccgactatatttatattttaaattagtctttgtcttttgtcaaaaatttctcaatta 115  Q
    ||||||||||| |||||||||| |||||| |||| ||||| |||| |||||||||||    
T  5656627 ccgactatattaatattttaaactagtctctgtc-tttgttaaaagtttctcaatta 5656572  T

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