View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20563_high_15 (Length: 235)

Name: NF20563_high_15
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20563_high_15
NF20563_high_15
[»] chr6 (3 HSPs)
chr6 (14-220)||(33590027-33590231)
chr6 (14-106)||(12779692-12779781)
chr6 (14-101)||(32719117-32719201)
[»] chr2 (8 HSPs)
chr2 (14-108)||(21626304-21626395)
chr2 (14-106)||(43572357-43572446)
chr2 (14-104)||(37194446-37194533)
chr2 (14-107)||(13018290-13018380)
chr2 (14-101)||(26905989-26906073)
chr2 (14-99)||(40212182-40212264)
chr2 (21-103)||(1365009-1365088)
chr2 (21-103)||(41099931-41100010)
[»] chr4 (5 HSPs)
chr4 (14-106)||(12708647-12708736)
chr4 (14-101)||(29114061-29114145)
chr4 (14-101)||(38136652-38136736)
chr4 (14-101)||(30198589-30198673)
chr4 (22-105)||(33500708-33500788)
[»] chr3 (7 HSPs)
chr3 (21-104)||(33944455-33944535)
chr3 (14-104)||(44400878-44400965)
chr3 (14-103)||(48908708-48908794)
chr3 (14-101)||(37673971-37674055)
chr3 (14-76)||(33900558-33900617)
chr3 (14-102)||(5939598-5939683)
chr3 (14-104)||(3537385-3537472)
[»] chr1 (9 HSPs)
chr1 (14-104)||(37649431-37649518)
chr1 (14-97)||(29092262-29092342)
chr1 (14-101)||(34154156-34154240)
chr1 (14-57)||(14439749-14439792)
chr1 (14-57)||(17760344-17760387)
chr1 (14-57)||(24369122-24369165)
chr1 (21-106)||(46001752-46001834)
chr1 (14-57)||(52068006-52068049)
chr1 (14-101)||(2909296-2909380)
[»] chr7 (3 HSPs)
chr7 (17-104)||(16805382-16805466)
chr7 (14-57)||(4058005-4058048)
chr7 (21-105)||(42254154-42254235)
[»] chr5 (3 HSPs)
chr5 (17-57)||(10438158-10438198)
chr5 (14-99)||(10843213-10843295)
chr5 (14-57)||(39649750-39649793)
[»] scaffold0031 (1 HSPs)
scaffold0031 (14-57)||(93365-93408)
[»] chr8 (2 HSPs)
chr8 (14-57)||(34336209-34336252)
chr8 (14-57)||(36837357-36837400)
[»] scaffold0128 (1 HSPs)
scaffold0128 (21-101)||(26567-26644)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 33590231 - 33590027
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaagagtttcatg 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33590231 ttgaaaaatttctccaatttttctcatattttgcacccctcaaa----cctttccttcccttttcatccaaattcccaaacaaagcccaagagtttcatg 33590136  T
Q  114 cgc-------tgact-gtaatatcctctctcatgagagtttgaaccctaagcatactttttatgttaagataaacacaaattcaaatctatgtattttgt 205  Q
    |||       ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      ||||||    
T  33590135 cgcaggatattgaatcgtaatatcctctctcatgagagtttgaaccctaagcatactttttacgttaagataaacacaaattcaaatc------ttttgt 33590042  T
Q  206 tctgaaagtggtaac 220  Q
    |||||||||||||||    
T  33590041 tctgaaagtggtaac 33590027  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 12779692 - 12779781
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaagag 106  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |   ||||| || ||||  | | |||| ||||||||||||||||||||    
T  12779692 ttgaaaaatttctccatttttcctcatattttgcacccctcaaagt---ctttcatttccttccccttcaaactcccaaacaaagcctaagag 12779781  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 32719201 - 32719117
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| ||||||| | |||| |||||||||||||||||||||   | ||||||||| ||||  | || ||| |||||||||||||||    
T  32719201 ttgaaagatttctctatttttactcatattttgcacccctcaa---agcctttcctttccttcccctctaaactcccaaacaaagcct 32719117  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 21626304 - 21626395
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaagagtt 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||   | |||||| || ||||  | | |||| ||||||||||||||||||||||    
T  21626304 ttgaaaaatttctccatttttcctcatattttgcacccctcaa---agcctttcatttccttccccttcaaactcccaaacaaagcctaagagtt 21626395  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 43572446 - 43572357
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaagag 106  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   | ||||||||| ||||  | |||||| ||||||||||||||||||||    
T  43572446 ttgaaagatttctctatttttcctcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcctaagag 43572357  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 37194446 - 37194533
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaag 104  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    |||||| ||  |||| | |||||| ||||||||||||||||||    
T  37194446 ttgaaagatttctctatttttcctcatattttgcacccctcaaag---cctttcattttctttccctccaaactcccaaacaaagcctaag 37194533  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 13018380 - 13018290
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaagagt 107  Q
    |||||| ||||||| | |||| | ||||||||||||||||||||    ||||||||| ||||  | |||||| |||||||||||||||||||||    
T  13018380 ttgaaagatttctctattttttcacatattttgcacccctcaaag---cctttcctttccttcccctccaaactcccaaacaaagcctaagagt 13018290  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 26905989 - 26906073
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   | | ||||||| ||||  |||||||| ||||||| |||||||    
T  26905989 ttgaaagatttctctatttttcctcatattttgcacccctcaa---agcttttcctttccttcccatccaaactcccaaagaaagcct 26906073  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 40212182 - 40212264
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagc 99  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    ||||| ||| ||||  | |||||| |||||||||||||    
T  40212182 ttgaaagatttctctatttttcctcatattttgcacccctcaaag---ccttttctttccttcccctccaaactcccaaacaaagc 40212264  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 1365009 - 1365088
Alignment:
Q  21 atttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaa 103  Q
    ||||||| | ||||| ||||||||||||||||||||   | ||||||||| ||||  | |||||| || ||||||||||||||    
T  1365009 atttctctatttttcttcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcgcaaacaaagcctaa 1365088  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 41100010 - 41099931
Alignment:
Q  21 atttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaa 103  Q
    |||||| || ||| ||||||||||| |||||||||||    |||| || |||| | || ||||||||||||||||||||||||    
T  41100010 atttcttcattttccctcatatttttcacccctcaaag---ccttcccctcccctctcctccaaattcccaaacaaagcctaa 41099931  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 12708736 - 12708647
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaagag 106  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   | ||||||||| ||||| | |||||| |||||||||||| |||||||    
T  12708736 ttgaaagatttctctatttttcctcatattttgcacccctcaa---agcctttcctttcctttccctccaaactcccaaacaaagtctaagag 12708647  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 29114145 - 29114061
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   | ||||||||| ||||  | |||||| |||||||||||||||    
T  29114145 ttgaaagatttctctatttttcctcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcct 29114061  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 38136736 - 38136652
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| ||||||| | ||| ||||||||||||||||||||||   | ||||||||||||||  | |||||| |||||||||||||||    
T  38136736 ttgaaagatttctctattttccctcatattttgcacccctcaa---agcctttccttcccttcccctccaaactcccaaacaaagcct 38136652  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 30198673 - 30198589
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    ||||||||| ||||    |||||| |||||||||||||||    
T  30198673 ttgaaagatttctctatttttcctcatattttgcacccctcaaag---cctttcctttccttcctctccaaactcccaaacaaagcct 30198589  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 33500708 - 33500788
Alignment:
Q  22 tttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaaga 105  Q
    |||||| | |||||| |||||||||||||||||||   | ||||||||| ||||  | |||||| |||||||||||||||||||    
T  33500708 tttctctatttttccacatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcctaaga 33500788  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 33944535 - 33944455
Alignment:
Q  21 atttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaag 104  Q
    ||||||| | ||||||||||||||||||||||||||   | ||||||||| ||||| | |||||| ||||||||||||||||||    
T  33944535 atttctctatttttcctcatattttgcacccctcaa---agcctttcctttcctttccctccaaactcccaaacaaagcctaag 33944455  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 44400878 - 44400965
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaag 104  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   | ||||||||| ||||  | |||||| ||||||||||||||||||    
T  44400878 ttgaaagatttctctatttttcctcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcctaag 44400965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 48908794 - 48908708
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaa 103  Q
    |||||| ||||||| | ||||||||||||| ||||||||||||   | ||||||||| ||||  | |||||| |||||||||||||||||    
T  48908794 ttgaaagatttctctatttttcctcatattctgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcctaa 48908708  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 37674055 - 37673971
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   | ||||||||| ||||  | |||||| ||||||| |||||||    
T  37674055 ttgaaagatttctctatttttcctcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaagaaagcct 37673971  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 33900617 - 33900558
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttt 76  Q
    |||||||||||||| | ||||||||||||||||||||| ||||   |||||||| ||||||||    
T  33900617 ttgaaaaatttctctatttttcctcatattttgcacccttcaa---aacctttcattcccttt 33900558  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 5939683 - 5939598
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagccta 102  Q
    |||||| ||||||| |  |||||| ||||||||||||||||||   | ||||||||| ||||  | |||||| ||||||||||||||||    
T  5939683 ttgaaagatttctctatatttccttatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagccta 5939598  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 3537385 - 3537472
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaag 104  Q
    |||||| |||||| || ||| ||||||||||| |||||||||||    |||| || ||||||  | |||||| ||||||||||||||||||    
T  3537385 ttgaaagatttcttcattttccctcatattttccacccctcaaag---ccttcccctcccttcccctccaaactcccaaacaaagcctaag 3537472  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 37649518 - 37649431
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaag 104  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   | ||||||||| ||||  | |||||| ||||||||||||||||||    
T  37649518 ttgaaagatttctctatttttcctcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcctaag 37649431  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 29092262 - 29092342
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaa 97  Q
    |||||| ||||||| | ||||||||||||||||||||||||||   ||||||| ||| | ||||| |||||| | |||||||||    
T  29092262 ttgaaagatttctctatttttcctcatattttgcacccctcaa---aaccttttctttcattttcctccaaacttccaaacaaa 29092342  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 34154240 - 34154156
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| ||||||| | |||| |||||||||||||||||||||   || |||||||| ||||  | |||||| |||||||||||||||    
T  34154240 ttgaaagatttctctattttttctcatattttgcacccctcaa---aatctttcctttccttcccctccaaactcccaaacaaagcct 34154156  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 14439749 - 14439792
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||    
T  14439749 ttgaaagatttctccatttttcctcatatttttcacccctcaaa 14439792  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 17760387 - 17760344
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||||||||||| | |||||||||||| ||||||||||||||    
T  17760387 ttgaaaaatttctctatttttcctcatatgttgcacccctcaaa 17760344  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 24369165 - 24369122
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||    
T  24369165 ttgaaagatttctccatttttcctcgtattttgcacccctcaaa 24369122  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 46001752 - 46001834
Alignment:
Q  21 atttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaagag 106  Q
    ||||||| | ||||| ||||||||||||||||||||   ||||||||||| ||||| | |||||| ||| ||||||| ||| ||||    
T  46001752 atttctctatttttcttcatattttgcacccctcaa---aacctttcctttcctttccctccaaactcctaaacaaaaccttagag 46001834  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 52068049 - 52068006
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  52068049 ttgaaagatttctctatttttcctcatattttgcacccctcaaa 52068006  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 2909296 - 2909380
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    |||||| || |||| | |||| |||||||||||||||||||||   | ||||||||| ||||  | |||||| |||||||||||||||    
T  2909296 ttgaaagatctctctattttttctcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcct 2909380  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 16805466 - 16805382
Alignment:
Q  17 aaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaag 104  Q
    ||||||||||| | ||||||||||||||||||||||||||| |   ||||| || ||||  | |||||| ||||||||||||||||||    
T  16805466 aaaaatttctctatttttcctcatattttgcacccctcaaagt---ctttcttttccttcccctccaaactcccaaacaaagcctaag 16805382  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 4058048 - 4058005
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  4058048 ttgaaagatttctctatttttcctcatattttgcacccctcaaa 4058005  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 42254154 - 42254235
Alignment:
Q  21 atttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcctaaga 105  Q
    ||||||| | ||||| ||||||||| |||||||||||    ||||||||| ||||  | |||||| |||||||||||||||||||    
T  42254154 atttctctatttttcttcatattttacacccctcaaag---cctttcctttccttcccctccaaactcccaaacaaagcctaaga 42254235  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 10438158 - 10438198
Alignment:
Q  17 aaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  10438158 aaaaatttctctatttttcctcatattttgcacccctcaaa 10438198  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 10843213 - 10843295
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagc 99  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    ||||||||  ||||  | |||||| |||||||||||||    
T  10843213 ttgaaagatttctctatttttcctcatattttgcacccctcaaag---cctttcctctccttcccctccaaactcccaaacaaagc 10843295  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 39649750 - 39649793
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  39649750 ttgaaagatttctctatttttcctcatattttgcacccctcaaa 39649793  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 93408 - 93365
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  93408 ttgaaagatttctctatttttcctcatattttgcacccctcaaa 93365  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 34336209 - 34336252
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||    
T  34336209 ttgaaagatttctccatttttcctcatattttccacccctcaaa 34336252  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 36837400 - 36837357
Alignment:
Q  14 ttgaaaaatttctccaattttcctcatattttgcacccctcaaa 57  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  36837400 ttgaaagatttctctatttttcctcatattttgcacccctcaaa 36837357  T

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Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 26567 - 26644
Alignment:
Q  21 atttctccaattttcctcatattttgcacccctcaaattaacctttccttcccttttcatccaaattcccaaacaaagcct 101  Q
    ||||||| | |||| |||||||||||||||||||||   | ||||||||| ||||  | |||||| |||||||||||||||    
T  26567 atttctctattttttctcatattttgcacccctcaa---agcctttcctttccttcccctccaaactcccaaacaaagcct 26644  T

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