View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20563_high_20 (Length: 202)

Name: NF20563_high_20
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20563_high_20
NF20563_high_20
[»] chr4 (5 HSPs)
chr4 (19-188)||(48898195-48898379)
chr4 (19-99)||(48870119-48870199)
chr4 (19-99)||(48885805-48885885)
chr4 (19-110)||(49044650-49044741)
chr4 (19-95)||(45366642-45366718)
[»] chr8 (1 HSPs)
chr8 (19-90)||(4032337-4032408)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 48898379 - 48898195
Alignment:
Q  19 acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcggtggattcttcttcctcttc 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48898379 acaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcggtggattcttcttccttttc 48898280  T
Q  119 tttaagc---------------gacggttgtttctcctcatttcggtcagcttgatttagggtttggtttagttgatagaattat 188  Q
    |||||||               ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48898279 tttaagcgcctttgtcttgtgtgacggttgtttctcctcatttcggtcagcttgatttagggtttggcttagttgatagaattat 48898195  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 48870199 - 48870119
Alignment:
Q  19 acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcgg 99  Q
    |||||| || ||||||||  ||||||| ||||| ||||| ||||||||||||||||  | |||||||||| | ||||||||    
T  48870199 acaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcgg 48870119  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 48885885 - 48885805
Alignment:
Q  19 acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcgg 99  Q
    |||||| || ||||||||  ||||||| ||||| ||||| ||||||||||||||||  | |||||||||| | ||||||||    
T  48885885 acaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcgg 48885805  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 49044650 - 49044741
Alignment:
Q  19 acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcggtggattcttct 110  Q
    |||||||||||||||||||  ||||||  |||| || |  |||||||||||  | |||| ||| |||||||| |||| ||||||||||||||    
T  49044650 acaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcagatacggtggattcttct 49044741  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 45366642 - 45366718
Alignment:
Q  19 acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagat 95  Q
    |||||| |||||||||||| ||||||| ||||| ||||  || || || ||||| || | |||||||||||||||||    
T  45366642 acaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 4032337 - 4032408
Alignment:
Q  19 acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgagg 90  Q
    ||||||||||||||||||| ||||||| ||||  ||||| ||||| |  ||||| |||| ||||||||||||    
T  4032337 acaaacacacttgaaacgtataagagacttcattggtagtctcagtaagatttggatgatcaattcatgagg 4032408  T

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