View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20563_high_5 (Length: 438)
Name: NF20563_high_5
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_high_5 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0027 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 63484 - 63059
Alignment:
| Q |
1 |
ctggtcacaatggtctgatctgctatgttatttctgaaattgaatatactcattagtgtaagataactcttgaatgnnnnnnnngtccatatataaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
63484 |
ctggtcacaatggtctgatctgctgtgttatttctgaaattgaatatactcattagtgtaagataactcttgaatgttttttttgttcatatataaacca |
63385 |
T |
|
| Q |
101 |
gtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctcttgaatcgtctcacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63384 |
gtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctcttgaatcgtctcacg |
63285 |
T |
|
| Q |
201 |
ctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttagttattttagtgctttgaactttgaagtagctgaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63284 |
ctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttagttattttagtgctttgaactttgaagtagctgaacc |
63185 |
T |
|
| Q |
301 |
atgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatattaaacgttttataatatttatgcacaactatgattttcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
63184 |
atgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatataaaacgttttataatatttatgcacaactttgattttcaa |
63085 |
T |
|
| Q |
401 |
tgaaaattgtgtctatgtttggcttc |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
63084 |
tgaaaattgtgtctatgtttggcttc |
63059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 21320315 - 21320740
Alignment:
| Q |
1 |
ctggtcacaatggtctgatctgctatgttatttctgaaattgaatatactcattagtgtaagataactcttgaatgnnnnnnnngtccatatataaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
21320315 |
ctggtcacaatggtctgatctgctgtgttatttctgaaattgaatatactcattagtgtaagataactcttgaatgttttttttgttcatatataaacca |
21320414 |
T |
|
| Q |
101 |
gtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctcttgaatcgtctcacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21320415 |
gtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctcttgaatcgtctcacg |
21320514 |
T |
|
| Q |
201 |
ctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttagttattttagtgctttgaactttgaagtagctgaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21320515 |
ctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttagttattttagtgctttgaactttgaagtagctgaacc |
21320614 |
T |
|
| Q |
301 |
atgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatattaaacgttttataatatttatgcacaactatgattttcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21320615 |
atgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatataaaacgttttataatatttatgcacaactttgattttcaa |
21320714 |
T |
|
| Q |
401 |
tgaaaattgtgtctatgtttggcttc |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
21320715 |
tgaaaattgtgtctatgtttggcttc |
21320740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 44633767 - 44633722
Alignment:
| Q |
381 |
tgcacaactatgattttcaatgaaaattgtgtctatgtttggcttc |
426 |
Q |
| |
|
|||| |||| |||||| |||||||||||||||| |||||||||||| |
|
|
| T |
44633767 |
tgcataactttgatttgcaatgaaaattgtgtcgatgtttggcttc |
44633722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University