View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20563_low_1 (Length: 785)
Name: NF20563_low_1
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_low_1 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 16 - 647
Target Start/End: Complemental strand, 38122173 - 38121547
Alignment:
| Q |
16 |
ataatcaccaagaagaaactatgcactaatattgtctaatagtgaaattaatgctatagcgaccaaacatgtttgacgatttttaaaatgtacaagcatt |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38122173 |
ataatcactaagaagaaactatgcactaatattgtctaatagtgaaattaatgctatagcgaccaaacatgtttgacgatttttaaaatgtacaagcatt |
38122074 |
T |
|
| Q |
116 |
tctaactccaaaattaatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38122073 |
tctaactccaaaattaatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagaga |
38121974 |
T |
|
| Q |
216 |
gaataggaatggtaattaatgtttctgaatccaaattttccgctaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagt |
315 |
Q |
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|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121973 |
gaataggactggtaat----gtttctgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagt |
38121878 |
T |
|
| Q |
316 |
tgcaccgttgcatcaagggataagactagataccttagtttccacaatgttggatctacatttttaaaggagataagaataatttggtggctgaggtgga |
415 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38121877 |
tgcaccgttgcatcaagggataagactagatgccttagtttccacaatgttggatccacatttttaaaggagataagaataatttggtggctgacatgga |
38121778 |
T |
|
| Q |
416 |
ggcgtgaggagtgcaatgttcgaactccaccttcaccaaaaactaacaatattaacatttattgttttaagaaaacggtgatatatgtaattacattcnn |
515 |
Q |
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| T |
38121777 |
agagtgaggagtgcaatgttcgaactccaccttcaacaaaaactaacaatactaacatttattgttttaagaaaacagtgatatatgtaattacattc-t |
38121679 |
T |
|
| Q |
516 |
nnnnnnctccgttcaaccaaatcaaacacattcatcccaaatatacatctacatgcatcaagatgaaacggcactcttataaaaaggaggagaatagttc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121678 |
ttttttctccgttcaaccaaatcaaacacattcatcccaaatatacatctacatgcatcaagatgaaacggcactcttataaaaaggaggagaatagttc |
38121579 |
T |
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| Q |
616 |
aagtatttatagtataataactataaaatgta |
647 |
Q |
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| T |
38121578 |
aaatatttatagaataataactataaaatgta |
38121547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 4620979 - 4620836
Alignment:
| Q |
70 |
tatagcgaccaaacatgtttgacgatttttaaaatgtacaagcatttctaactccaaaattaatacctcaattggcttttgcttctaaggatcactaagc |
169 |
Q |
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|||||| |||||||||| || || |||| ||| |||| || ||||| | ||| || ||| |||||||||||||| |||||| ||||||||||| ||| | |
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| T |
4620979 |
tatagccaccaaacatgcttaacc-ttttaaaattgtaaaaccattttttactacagaatgaatacctcaattggattttgcatctaaggatcaataaac |
4620881 |
T |
|
| Q |
170 |
ctctcagctccacaagtcaataacggtttcactgttgaaatagag |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
4620880 |
ctctcagctccacaagtcaataactgtttcactgttgcaatagag |
4620836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 645 - 709
Target Start/End: Complemental strand, 38121252 - 38121188
Alignment:
| Q |
645 |
gtaagtaagaaaattgagataaacaaggtgtctcacataagagtctatattttgatgttcaaata |
709 |
Q |
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| T |
38121252 |
gtaagtaagaaaattgagataaacaaggtgtctcacataagagtctatattttgattttcaaata |
38121188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 4620754 - 4620699
Alignment:
| Q |
264 |
aggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgca |
319 |
Q |
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|||||||||| ||||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
4620754 |
aggtttgaactttgaagttccaattaaagctcaattcaaaatcaatgaaagttgca |
4620699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 709 - 776
Target Start/End: Original strand, 3275208 - 3275275
Alignment:
| Q |
709 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
776 |
Q |
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| T |
3275208 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
3275275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 709 - 776
Target Start/End: Original strand, 3279784 - 3279851
Alignment:
| Q |
709 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
776 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3279784 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
3279851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 709 - 776
Target Start/End: Complemental strand, 28596966 - 28596899
Alignment:
| Q |
709 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
776 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596966 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
28596899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 709 - 776
Target Start/End: Complemental strand, 28601544 - 28601477
Alignment:
| Q |
709 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
776 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601544 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
28601477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 749
Target Start/End: Complemental strand, 24395289 - 24395249
Alignment:
| Q |
709 |
agtttgatttcagaagaatattttttctctgattgatatat |
749 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
24395289 |
agtttgatttgagaagaatattttttctctgattgatatat |
24395249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 776
Target Start/End: Original strand, 297931 - 297997
Alignment:
| Q |
709 |
agtttgatttcagaagaata-ttttttctctgattgatatatgttttattgaacatgtacaagaattat |
776 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| |||||||||||||||| ||||| |
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| T |
297931 |
agtttgatttgagaagaatatttttttctctgattg--atatttttcattgaacatgtacaaggattat |
297997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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