View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20563_low_11 (Length: 299)
Name: NF20563_low_11
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 10005605 - 10005885
Alignment:
| Q |
1 |
atgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
10005605 |
atgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggttgcttg |
10005704 |
T |
|
| Q |
101 |
gcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcag |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005705 |
gcttcctggtagtgaaggttctggtgttgccgatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcag |
10005804 |
T |
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| Q |
201 |
ttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggtcttacaactgaagcatataaggct |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10005805 |
ttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggccttacaactgaagcatataaggct |
10005885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 9999457 - 9999737
Alignment:
| Q |
1 |
atgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
9999457 |
atgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggatgattg |
9999556 |
T |
|
| Q |
101 |
gcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcag |
200 |
Q |
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| T |
9999557 |
gcttcctggtagtgaaggttctggtgttgccgatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcag |
9999656 |
T |
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| Q |
201 |
ttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggtcttacaactgaagcatataaggct |
281 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9999657 |
ttaccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggtcttacaactgaagctcataaggct |
9999737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 9992502 - 9992754
Alignment:
| Q |
1 |
atgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttg |
100 |
Q |
| |
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|||||||| || ||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||| | |||||||| ||||| || |||| ||| |
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| T |
9992502 |
atgtatgcggcagagtgaaatgtgtcgttgtgttagtcactggtagacctgttgccatacaaccatatcttaacaaaattgacggactcgttgctgcttg |
9992601 |
T |
|
| Q |
101 |
gcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcag |
200 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||| |
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| T |
9992602 |
gcttcctggtagtgaaggtactggtgttgctgatgttttgtttggtgattatggatttactggtaagcttgctaggacatggtttaagactgttgatcag |
9992701 |
T |
|
| Q |
201 |
ttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatt |
253 |
Q |
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| T |
9992702 |
ttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatt |
9992754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 10013946 - 10014212
Alignment:
| Q |
1 |
atgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttg |
100 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||| |||||| | || |||||| ||||||||||||||| |||| | || ||||| ||||| || || | ||| |
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| T |
10013946 |
atgtatgcggcgcagtgaaatgtgttgttgtcttaatctctggaagacctgttgttatacaaccatttcttcacaacattgacggactcgttgcggcttg |
10014045 |
T |
|
| Q |
101 |
gcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcag |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||| |
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| T |
10014046 |
gcttcctggtagtgaaggtactggtgttgctgatgttttgtttggtgattatggatttactggtaagctttcaaggacatggtttaagactgtccatcag |
10014145 |
T |
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| Q |
201 |
ttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggtcttacaactg |
267 |
Q |
| |
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|| || ||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
10014146 |
ttaccgatgaatgttggggatcgtcattatgatcctttgtttccgtttgggtttggtcttacaactg |
10014212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 262
Target Start/End: Complemental strand, 33353383 - 33353209
Alignment:
| Q |
88 |
ttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaa |
187 |
Q |
| |
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|||| ||||||||||| || ||||||||||| ||||| || |||||||| |||||||||||||| || || || || |||||||| |||||||| || |
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| T |
33353383 |
ttgttgctggttggctaccaggtagtgaaggacaaggtgtggctgatgttttatttggtgattatggtttcacaggaaagcttccaagaacatggttcaa |
33353284 |
T |
|
| Q |
188 |
gactgttgatcagttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggtcttac |
262 |
Q |
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| ||||||||| | |||||||||||||| ||| |||||||||| || | || |||||||| ||||| ||||| |
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| T |
33353283 |
aagtgttgatcaacttccaatgaatgttggagatcctcattatgaccccgttttcccatttgggtttggccttac |
33353209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 35994277 - 35994459
Alignment:
| Q |
75 |
aaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaa |
174 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||| | |||||| |||||||| || ||| | | |||||| | || ||| || || ||||| ||| |
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| T |
35994277 |
aaaattgatgcacttgtggctgcatggcttcctggcactgaaggccaaggtgttgccgacgttctctatggtgactttgaattcactggcaaactggcaa |
35994376 |
T |
|
| Q |
175 |
ggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggt |
257 |
Q |
| |
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|||||||||| ||||| || || ||| | |||||||||||||| ||| |||||||||||| | |||||||||||||||||| |
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| T |
35994377 |
ggacatggttcaagacagtagaccagcttccaatgaatgttggcgataaacattatgatcctctatttccatttggatttggt |
35994459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 11244412 - 11244300
Alignment:
| Q |
123 |
ggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgatt |
222 |
Q |
| |
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||||| || |||||| | |||||||| ||||| || || ||||||||| ||||||||||||| || |||| ||||| | |||||||||||||| ||| |
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| T |
11244412 |
ggtgtggcagatgttctttttggtgactatggtttcactggtaaacttgcaaggacatggttcaaatctgtcgatcaactcccaatgaatgttggagatc |
11244313 |
T |
|
| Q |
223 |
ctcattatgatcc |
235 |
Q |
| |
|
|||| || ||||| |
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|
| T |
11244312 |
ctcactacgatcc |
11244300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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