View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20563_low_12 (Length: 257)

Name: NF20563_low_12
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20563_low_12
NF20563_low_12
[»] chr8 (4 HSPs)
chr8 (1-242)||(34570074-34570313)
chr8 (111-211)||(1770914-1771014)
chr8 (122-209)||(1786397-1786484)
chr8 (122-211)||(1781491-1781580)
[»] chr4 (2 HSPs)
chr4 (61-211)||(34688827-34688973)
chr4 (130-174)||(52549829-52549873)
[»] chr2 (3 HSPs)
chr2 (69-211)||(13824483-13824625)
chr2 (124-204)||(5521753-5521833)
chr2 (155-210)||(36267830-36267885)
[»] chr6 (3 HSPs)
chr6 (130-210)||(2420114-2420194)
chr6 (61-165)||(3410686-3410788)
chr6 (127-164)||(20855774-20855811)
[»] chr1 (3 HSPs)
chr1 (127-210)||(34452589-34452672)
chr1 (111-195)||(28196316-28196400)
chr1 (122-211)||(23410728-23410815)
[»] chr7 (1 HSPs)
chr7 (61-202)||(28426697-28426835)
[»] chr5 (1 HSPs)
chr5 (130-210)||(7825800-7825877)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34570074 - 34570313
Alignment:
Q  1 acacaaggaatatttaaagccatgaaaagggttatacannnnnnnnacggtnnnnnnnnncttcattcaaatgctaaaataacgagggtacaatcaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||        |||||         ||||||||||||||||||||| ||||||||||||||||||    
T  34570074 acacaaggaatatttaaagccatgaaaagggttatacattttttttacggtaaaaaaaaacttcattcaaatgctaaaatagcgagggtacaatcaaatt 34570173  T
Q  101 ggttacgaggtgagacattccccatccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34570174 ggttacgaggtgagacattccccatccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaacca 34570273  T
Q  201 aactcttaatcatttgtgaaaggggttatacatgtttatgat 242  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  34570274 aactctt--tcatttgtgaaaggggttatacatgtttatgat 34570313  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 1770914 - 1771014
Alignment:
Q  111 tgagacattccccatccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaat 210  Q
    ||||||||||  ||||||||||||||||| ||| |||||| ||||||| |||||||||| |||| ||  |||||||| ||||||||  |||| |||||||    
T  1770914 tgagacattcttcatccatattttgaaagacaattacatgctatcaatgcacataaaaaattcataagtcaaaagtacattaacaagtcaaaatcttaat 1771013  T
Q  211 c 211  Q
    |    
T  1771014 c 1771014  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 1786397 - 1786484
Alignment:
Q  122 ccatccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaa 209  Q
    |||||||||||||||||| |||||||||| ||||||| | |||||||| || | ||  |||||||| |||||||||||||| ||||||    
T  1786397 ccatccatattttgaaagacaaatacatgctatcaatgctcataaaaaatttataagtcaaaagtacattaacaaaccaaaatcttaa 1786484  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 1781491 - 1781580
Alignment:
Q  122 ccatccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaatc 211  Q
    |||||||||||||||||| |||||||||| |||||||   |||||||| || | ||  ||||| || |||||||||||||| ||||||||    
T  1781491 ccatccatattttgaaagacaaatacatgctatcaatgttcataaaaaatttataagtcaaaattacattaacaaaccaaaatcttaatc 1781580  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 34688973 - 34688827
Alignment:
Q  61 cttcattcaaatgctaaaataacgagggtacaatcaaattggttacgaggtgagacattccccatccatattttgaaagccaaatacatgttatcaatac 160  Q
    ||||||||||||  | |||||||||| ||||||||||||||| || ||| ||||||||| ||||| || |||||||||||| || ||||| || ||||||    
T  34688973 cttcattcaaatattgaaataacgagagtacaatcaaattggctatgagttgagacatttcccatacacattttgaaagccgaaaacatgctaccaatac 34688874  T
Q  161 acataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaatc 211  Q
    ||    |||||| ||||| |||||||  |||||||||||||||||||||||    
T  34688873 ac----aaatttaagaaaccaaaagttcattaacaaaccaaactcttaatc 34688827  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 52549873 - 52549829
Alignment:
Q  130 attttgaaagccaaatacatgttatcaatacacataaaaatttca 174  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  52549873 attttgaaagccaaatacatgttatcgatacacatagaaatttca 52549829  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 13824625 - 13824483
Alignment:
Q  69 aaatgctaaaataacgagggtacaatcaaattggttacgaggtgagacat-tccccatccatattttgaaagccaaatacatgttatcaatacacataaa 167  Q
    |||||||||||||||||| ||||||||||||||| || ||| || |||||  ||||| | | ||| | ||||||||| ||||| || ||||||| |||||    
T  13824625 aaatgctaaaataacgagagtacaatcaaattggatatgagttgggacatgcccccaacaacattcttaaagccaaaaacatgctaccaatacatataaa 13824526  T
Q  168 aatttcagaaagcaaaagtaaattaacaaaccaaactcttaatc 211  Q
    |||||||| |||| ||| | || |||||||||||||||||||||    
T  13824525 aatttcag-aagccaaaatgaactaacaaaccaaactcttaatc 13824483  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 5521753 - 5521833
Alignment:
Q  124 atccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaact 204  Q
    ||||| ||||| ||| |||||||||||| ||||||| ||| | ||||||   || ||||||||| ||||||||||||||||    
T  5521753 atccacattttaaaaaccaaatacatgtcatcaatatacagagaaattttttaaggcaaaagtacattaacaaaccaaact 5521833  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 36267830 - 36267885
Alignment:
Q  155 caatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaat 210  Q
    ||||||||||| |||||||||||| ||||| || ||||||||| ||||| ||||||    
T  36267830 caatacacatagaaatttcagaaaccaaaaatacattaacaaatcaaacccttaat 36267885  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 2420114 - 2420194
Alignment:
Q  130 attttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaat 210  Q
    ||||| ||| |||||||||||||||| ||||||||| |||||||||||  |||||||| ||||| |||| |||||||||||    
T  2420114 atttttaaaaccaaatacatgttatcgatacacatagaaatttcagaagtcaaaagtatattaaaaaactaaactcttaat 2420194  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 3410686 - 3410788
Alignment:
Q  61 cttcattcaaatgctaaaataacgagggtacaatcaaattggttacgaggtgagacattccccatccatattttgaaagccaaatacatgttatcaatac 160  Q
    |||| |||||||  |||||| ||||| ||||||||||||||  || ||| ||||||||  | ||||   |||||||||| |||||||||||||| |||||    
T  3410686 cttctttcaaatattaaaatgacgagagtacaatcaaattgtctatgagttgagacatgtcacatc--aattttgaaagtcaaatacatgttattaatac 3410783  T
Q  161 acata 165  Q
    |||||    
T  3410784 acata 3410788  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 20855774 - 20855811
Alignment:
Q  127 catattttgaaagccaaatacatgttatcaatacacat 164  Q
    |||||||||||||||||||||||||||| |||||||||    
T  20855774 catattttgaaagccaaatacatgttataaatacacat 20855811  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 34452589 - 34452672
Alignment:
Q  127 catattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaat 210  Q
    |||| |||||||  |||||||||| |||||||||| |||||||||| |||| | ||||||| |||||||||| |||||||||||    
T  34452589 cataatttgaaaatcaaatacatgctatcaatacatataaaaatttaagaaggtaaaagtacattaacaaactaaactcttaat 34452672  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 28196316 - 28196400
Alignment:
Q  111 tgagacattccccatccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaaca 195  Q
    |||||||||||| ||||||||||| ||| | ||||||||  |||||||||| |||||| ||||| ||  |||||||| |||||||    
T  28196316 tgagacattccctatccatatttttaaaacaaaatacattatatcaatacatataaaagtttcataagacaaaagtatattaaca 28196400  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 23410815 - 23410728
Alignment:
Q  122 ccatccatattttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactcttaatc 211  Q
    ||||||||| ||| ||||| | ||| |||||||||||| |  || || |||||||| ||||||||| |||| ||| ||||||||||||||    
T  23410815 ccatccatagtttcaaagctatataaatgttatcaatata--tagaagtttcagaaggcaaaagtacattagcaacccaaactcttaatc 23410728  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 28426697 - 28426835
Alignment:
Q  61 cttcattcaaatgctaaaataacgagggtacaatcaaattggttacgaggtgagacattccccatccatattttgaaagccaaatacatgttatcaatac 160  Q
    ||||||||||||||||||||||| || ||| ||||||||||  || ||  ||||||||  ||| |  ||||||| |||| ||||||||| |||||||||     
T  28426697 cttcattcaaatgctaaaataactagagtataatcaaattgtctatgaactgagacatggcccttaaatattttaaaagtcaaatacatattatcaatag 28426796  T
Q  161 acataaaaatttcagaaagca-aaagtaaattaacaaaccaaa 202  Q
    ||||    ||||||| ||||| ||||||||||||| |||||||    
T  28426797 acat---gatttcag-aagcataaagtaaattaaccaaccaaa 28426835  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 7825877 - 7825800
Alignment:
Q  130 attttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaa-gtaaattaacaaaccaaactcttaat 210  Q
    |||||||||| ||||||||| ||||||||| |||||    ||||| ||||||||| ||||||||||||||||||||||||||    
T  7825877 attttgaaagtcaaatacatattatcaatatacatag---tttca-aaagcaaaatgtaaattaacaaaccaaactcttaat 7825800  T

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